View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_high_47 (Length: 443)
Name: NF1271_high_47
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 28192205 - 28191802
Alignment:
| Q |
11 |
cacagagtttttcaactgcatctgttgggtggcccaagttttctgctagaattcctgccagtagcctagagacttctagcatagctgctgcaaactcatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28192205 |
cacagagtttttcaactgcatctgttgggtggcccaagttttctgctagaattcctgccagtagcctagagacttctagcatagctgctgcaaactcatt |
28192106 |
T |
|
| Q |
111 |
tattgcttctctgcagaaagggttagaaacaaattaaattgctgttctttctaagggtgaaatcatgcatgcacaacataactgtcctctgtcaaatgaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28192105 |
tattgcttctctgcagaaagggttagaaacaaattaacttgctgttctttctaagggtgaaatcatgcatgcacaacataactgtcctctgtcaaatgaa |
28192006 |
T |
|
| Q |
211 |
acaggttggttctagagacaactacattttgctcagaaggactagtcagtgcttgtctgagcataaattctagaagccaacctgtcaagatctataataa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28192005 |
acaggttggttctagagacaactacattttgctcagaaggactagtcagtgcttgtctgagcataaattctagaagccaacctgtcaagatctataataa |
28191906 |
T |
|
| Q |
311 |
actaacaagtggtcattttgtccatattcaaataatttgatatttcttcagtgtgaagtaagtaattaggacagttaatgaaaaatgttagttgtctgta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28191905 |
actaacaagtggtcattttgtccatattcaaataatttgatatttcttcagtgtgaagtaagtaattaggacagttaatgaaaaatgttagttgtctgta |
28191806 |
T |
|
| Q |
411 |
ttac |
414 |
Q |
| |
|
|||| |
|
|
| T |
28191805 |
ttac |
28191802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University