View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_48 (Length: 436)
Name: NF1271_high_48
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 205 - 386
Target Start/End: Original strand, 15728760 - 15728940
Alignment:
| Q |
205 |
cagttagattaagatgaaaaatatggctaaacaataacatacaattacaannnnnnnngtttcgtttgctacatgagttggttaaaatgatgtgaacaaa |
304 |
Q |
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| T |
15728760 |
cagttagattaagatgaaaaatatggctaaacaataacatacaattacaattttttt-gttttgtttgctacatgagttggttaaaatgatgtgaacaga |
15728858 |
T |
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| Q |
305 |
acaatgaattcaattcggtataagaaacaaagtcataatttcagaacctgcatcaaattagaaacaaaattgtgaataaaag |
386 |
Q |
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| T |
15728859 |
acaatgaattcaattcggtataagaaacaaagtcataatttcagaacctgcatcaaattagaaacaaaattgtgaataaaag |
15728940 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 15730155 - 15730186
Alignment:
| Q |
76 |
atcaaggtgggtagaagaagataacaaacaac |
107 |
Q |
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| T |
15730155 |
atcaaggtgggtagaagaagataacaaacaac |
15730186 |
T |
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