View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_50 (Length: 434)
Name: NF1271_high_50
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 40 - 412
Target Start/End: Complemental strand, 52343482 - 52343104
Alignment:
| Q |
40 |
gatgtgtcagatggaaaagctaaggggtagcatctccattttgtatgttggcagtaaaataagct----gtagtgact--gagtgagatgtgcttcctgt |
133 |
Q |
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| T |
52343482 |
gatgtgtcagatggaaaagctaaggggtagcatctccattttgtatgtaggcagtaaaataagctagtagtagagattttgagtgagatgtgcttcctgt |
52343383 |
T |
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| Q |
134 |
catatgactttaaatctttaatggggaatgaattcagttataactattgattttttgttatgactgaggagatggctgatggcttcctgacacattctta |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52343382 |
catatgactttaaatctttaatggggaatgaattcagttataactattgattttttgttatgactgaggagatggctgatggcttcctgacacattctta |
52343283 |
T |
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| Q |
234 |
caactgaaagctatctagattctagaatatggttaacgcctaaaaatacaggtctagactagtagacttttccattgaagcactaaacaagcaagattat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52343282 |
caactgaaagctatctagattctagaatatggttaacgcctaaaaatacaggtctagactagtagacttttccattgaagcactaaacaagcaagattat |
52343183 |
T |
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| Q |
334 |
ttattagttacactctttacaaaaatgaactgcatattgaagaacacataaatcacaattcctcttccatattacaaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52343182 |
ttattagttacactctttacaaaaatgaactgcatattgaagaacacataaatcacaattcctcttccatattacaaat |
52343104 |
T |
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