View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_57 (Length: 401)
Name: NF1271_high_57
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 30836664 - 30837008
Alignment:
| Q |
29 |
acggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccattttctttgttatta |
128 |
Q |
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| T |
30836664 |
acggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccattttctttgttatta |
30836763 |
T |
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| Q |
129 |
attcgcaatgtatataacaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgcaaaccgcatgaaatttgtttggatcgat |
228 |
Q |
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| T |
30836764 |
attcgcaatgtatataacaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgcaaaccgcatgaaatttgtttggatcgat |
30836863 |
T |
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| Q |
229 |
caagtcccaccgcatcaattgttttaaacatagaaaatattttgtttgaatcttgatcgatttgacatatgtaatatggaggactagaggtcatcaatca |
328 |
Q |
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| T |
30836864 |
caagtcccaccgcatcaattg------------------ttttgtttgaatcttgatagatttgacatatgtaatatggaggactagaggtcatcaatca |
30836945 |
T |
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| Q |
329 |
tcctctccctacttcgaattttgtctgttttaacattttgtttccattcattttctccctatg |
391 |
Q |
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| T |
30836946 |
tcctctccctacttcgaattttgtctgttttaacattttgtttccattcattttctccctatg |
30837008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 30831238 - 30831313
Alignment:
| Q |
29 |
acggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttga |
104 |
Q |
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| T |
30831238 |
acggttgaaatctttccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttga |
30831313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 30854438 - 30854496
Alignment:
| Q |
56 |
aactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccat |
114 |
Q |
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| T |
30854438 |
aactcttgaactgatggtaccagaagagaagttccagaggggttcttgatctcttccat |
30854496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 30841928 - 30841984
Alignment:
| Q |
59 |
tcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccatt |
115 |
Q |
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| T |
30841928 |
tcttggactgatggtaccagaagagaagttccagaggggttcttgatctcttccatt |
30841984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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