View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_64 (Length: 391)

Name: NF1271_high_64
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_64
NF1271_high_64
[»] chr7 (4 HSPs)
chr7 (11-363)||(25539345-25539697)
chr7 (205-303)||(25534109-25534207)
chr7 (205-303)||(25516206-25516304)
chr7 (205-303)||(25526107-25526205)
[»] chr8 (3 HSPs)
chr8 (16-152)||(143054-143190)
chr8 (180-242)||(143218-143280)
chr8 (29-69)||(115461-115501)
[»] chr3 (2 HSPs)
chr3 (29-102)||(27123388-27123461)
chr3 (201-229)||(27123316-27123344)
[»] scaffold0003 (2 HSPs)
scaffold0003 (19-89)||(298441-298511)
scaffold0003 (182-231)||(298604-298653)
[»] chr4 (1 HSPs)
chr4 (16-72)||(45960569-45960625)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 25539345 - 25539697
Alignment:
Q  11 agaatatatgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatttggaaataaagtttaacaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25539345 agaatatatgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatttggaaataaagtttaacaaaa 25539444  T
Q  111 ccccaattctcaactggtttttgtgcctaggttgtttaccattatccaaatgtttcaaggctcgtttggaaatcccacatttgatcgtaaaccaagtaac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25539445 ccccaattctcaactggtttttgtgcctaggttgtttaccattatccaaatgtttcaaggctcgtttggaaatcccacatttgatcgtaaaccaagtaac 25539544  T
Q  211 tgaatgtgttcttaggaacctagttgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgactttgtttc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25539545 tgaatgtgttcttaggaacctagttgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgactttgtttc 25539644  T
Q  311 atactcttgaagatggaaaattgttggttgacacagaaacctttgaccatggt 363  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25539645 atactcttgaagatggagaattgttggttgacacagaaacctttgaccatggt 25539697  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 25534109 - 25534207
Alignment:
Q  205 agtaactgaatgtgttcttaggaacctagttgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgact 303  Q
    |||| ||||||||||||||||||| || | |||||||| ||||| ||||||| |  || ||||||||| |  ||| |||||||||||||||||||||||    
T  25534109 agtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtaccttttctatgcaactatgtttctctaattgact 25534207  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 25516304 - 25516206
Alignment:
Q  205 agtaactgaatgtgttcttaggaacctagttgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgact 303  Q
    |||| ||| |||||||||||||||||| | |||||||| ||||| ||||||| |  || ||||||||| |||||| |||  |||||| |||||||||||    
T  25516304 agtagctggatgtgttcttaggaacctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcatatgcaaacatgtttttctaattgact 25516206  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 25526107 - 25526205
Alignment:
Q  205 agtaactgaatgtgttcttaggaacctagttgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgact 303  Q
    |||| ||||||||||||||||||| || | |||||||| ||||| || || | |  || ||||| | | |||||| || ||||||||||||||||||||    
T  25526107 agtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaacaaactaactgaatgtgtgcatttcatatgcagctatgtttctctaattgact 25526205  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 143054 - 143190
Alignment:
Q  16 atatgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatttggaaataaagtttaacaaaacccca 115  Q
    ||||||||||| ||| || |||||||||| |||||| | |||||| || |||||| |  |||||| ||||||||  ||  |||||||||| || || |||    
T  143054 atatgtactaagaacagctacaaagttgagtgaagctggtattagtttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaagacacca 143153  T
Q  116 attctcaactggtttttgtgcctaggttgtttaccat 152  Q
    ||| | | ||||||||||||| |||||||| ||||||    
T  143154 attttgagctggtttttgtgcttaggttgtgtaccat 143190  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 143218 - 143280
Alignment:
Q  180 aaatcccacatttgatcgtaaaccaagtaactgaatgtgttcttaggaacctagttgcatttg 242  Q
    ||||||| |||||||  ||| |||||| ||| ||||||||||||||||||||| | |||||||    
T  143218 aaatcccgcatttgaatgtagaccaagcaacagaatgtgttcttaggaacctaatcgcatttg 143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 115501 - 115461
Alignment:
Q  29 actgcaacaaagttgaatgaagcggatattagctttgagaa 69  Q
    ||||||||||||||||||||||| | ||| |||||||||||    
T  115501 actgcaacaaagttgaatgaagctggtataagctttgagaa 115461  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 27123461 - 27123388
Alignment:
Q  29 actgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatttggaaataaagtt 102  Q
    |||| |||||||||||||||| | ||||||||||||||||||||  |||||| || ||||||||  ||||||||    
T  27123461 actgtaacaaagttgaatgaaacagatattagctttgagaaagttcaaggtagaaactatttgggcataaagtt 27123388  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 27123344 - 27123316
Alignment:
Q  201 accaagtaactgaatgtgttcttaggaac 229  Q
    |||||||||||||||||||||||||||||    
T  27123344 accaagtaactgaatgtgttcttaggaac 27123316  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 298441 - 298511
Alignment:
Q  19 tgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatt 89  Q
    |||||||| ||| || ||||||||||  ||||| | ||||||||||||||||||  |||||| ||||||||    
T  298441 tgtactaagaacagctacaaagttgagggaagcaggtattagctttgagaaagttcaaggtagaagctatt 298511  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 298604 - 298653
Alignment:
Q  182 atcccacatttgatcgtaaaccaagtaactgaatgtgttcttaggaacct 231  Q
    ||||| |||||||  ||| |||||| ||||||||||||||||||||||||    
T  298604 atcccgcatttgaaagtagaccaagcaactgaatgtgttcttaggaacct 298653  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 45960625 - 45960569
Alignment:
Q  16 atatgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagt 72  Q
    ||||| ||||| ||| || |||||||||| |||||| |||||||| |||||||||||    
T  45960625 atatgcactaagaacagctacaaagttgagtgaagcagatattagatttgagaaagt 45960569  T

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