View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_69 (Length: 387)
Name: NF1271_high_69
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_69 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 341
Target Start/End: Original strand, 30909586 - 30909929
Alignment:
| Q |
2 |
gcatctccaataatatggtagagacacaaggttacacatgtgaagaacataaggtaaataaatcatagcagatatgttgcagcatattctcacatgccat |
101 |
Q |
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| T |
30909586 |
gcatctgcaaaagtatggtagagacacaaggttacacatgtgaagaacataaggtaaataaatcatagcagacatgttgcagcatattctcacatgccat |
30909685 |
T |
|
| Q |
102 |
ttgattatgaagaaatattttccatatttgatgtactaa----ctataattatactaaaatcttaaatatgagacaagttaatgtgatgaaccaagcaag |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30909686 |
ttgattatgaagaaatattttccatatttgatgtactaattaactataattatgctaaaatcttaaatatgagacaagttaatgtgatgaaccaaacaag |
30909785 |
T |
|
| Q |
198 |
tacacatattttttgttgttgacaaaagcgcgcacatatattcagagatttagttaacacgaatattatttttgctgactcagattacaacatcggatgg |
297 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
30909786 |
tacacatattttttgttgtggacaaaagcgcgcacatatattcagagatttagttaacacgaatattatttttactgactcaggttacaacatcagatgg |
30909885 |
T |
|
| Q |
298 |
cttcatcttgagtattcagagattgccgacaaggcggtccggtg |
341 |
Q |
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| T |
30909886 |
cttcatcttgagtattcaaagattgccgacaaggcggtccggtg |
30909929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 30903134 - 30903183
Alignment:
| Q |
15 |
tatggtagagacacaaggttacacatgtgaagaacataaggtaaataaat |
64 |
Q |
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| T |
30903134 |
tatggtagagacacaagggtacacatgtgaagaacataaggtaaataaat |
30903183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 11298102 - 11298200
Alignment:
| Q |
243 |
agatttagttaacacgaatattatttttgctgactcagattacaacatcggatggcttcatcttgagtattcagagattgccgacaaggcggtccggtg |
341 |
Q |
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||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||| || |||||||||||| || |||||||||||| |
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| T |
11298102 |
agatttagttaacactaatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccggcagggcggtccggtg |
11298200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 11292639 - 11292695
Alignment:
| Q |
15 |
tatggtagagacacaaggttacacatgtgaagaacataaggtaaataaatcatagca |
71 |
Q |
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| T |
11292639 |
tatggtagagacacaaggttacacttgtgaagaacataaggtaattaaatcatagca |
11292695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 11292757 - 11292837
Alignment:
| Q |
245 |
atttagttaacacgaatattatttttgctgactcagattacaacatcggatggcttcatcttgagtattcagagattgccg |
325 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||| || |||||||||||| |
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| T |
11292757 |
atttagttaacaataatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccg |
11292837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 11297992 - 11298033
Alignment:
| Q |
15 |
tatggtagagacacaaggttacacatgtgaagaacataaggt |
56 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11297992 |
tatgatagagacacaaggttacacatgtgaagaacataaggt |
11298033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 36662104 - 36662150
Alignment:
| Q |
15 |
tatggtagagacacaaggttacacatgtgaagaacataaggtaaata |
61 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36662104 |
tatggtagaaacacaaggttacacatgtgaagaacataaggtaaata |
36662150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 36706307 - 36706262
Alignment:
| Q |
17 |
tggtagagacacaaggttacacatgtgaagaacataaggtaaataa |
62 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
36706307 |
tggttgagccacaaggttacccatgtgaagaacataaggtaaataa |
36706262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 36713949 - 36713907
Alignment:
| Q |
19 |
gtagagacacaaggttacacatgtgaagaacataaggtaaata |
61 |
Q |
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||||||||||||||||| || ||||||||||||| |||||||| |
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| T |
36713949 |
gtagagacacaaggttatacgtgtgaagaacatacggtaaata |
36713907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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