View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_71 (Length: 386)
Name: NF1271_high_71
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 45709529 - 45709166
Alignment:
| Q |
1 |
ttggcttatactgtttgtggtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgctt |
100 |
Q |
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| T |
45709529 |
ttggcttatactgtttgtggtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgctt |
45709430 |
T |
|
| Q |
101 |
ctggagttatgctatggtacgttatgacaatctctat----ctcttaatacatgatcatattaagttaatgtctagagcctaaatcacgtacgtgcatgt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709429 |
ctggagttatgctatggtacgttatgacaatctctatatatctcttaatacatgatcatattaagttaatgtctagagcctaaatcacgtacgtgcatgt |
45709330 |
T |
|
| Q |
197 |
gatgtgatgtgacacaaaattaaatttgtatttcttgaaaggaaaaccttggtgtgcaagtaatatactcctacttatgttagtgatttgtgcagtttag |
296 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709329 |
gatgtga-----cacaaaattaaatttatatttcttgaaaggaaaaccttggtgtgcaagtaatatactcctacttatgttagtgatttgtgcagtttag |
45709235 |
T |
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| Q |
297 |
agaactggtattacaggatactgctacttatgactggccagttggagaatgcgactgttgctgatgatg |
365 |
Q |
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| T |
45709234 |
agaactggtattacaggatactgctacttatgactggccagttggagaatgcgactgttgctgttgatg |
45709166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 45718959 - 45718883
Alignment:
| Q |
37 |
tggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgcttctggagttatgct |
113 |
Q |
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| T |
45718959 |
tggaatggtttttcagttgaagcttttgttggtttatgggatttctttaaactatctttggcttctggtgtcatgct |
45718883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 14092598 - 14092707
Alignment:
| Q |
10 |
actgtttgtggtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgcttctggagtta |
109 |
Q |
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||||||| |||||| |||||||| ||||||| ||| ||||| || || || |||||||| |||||||| || | ||||| ||| ||||||||| |||| |
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| T |
14092598 |
actgtttatggtggttgtcctttgacttggaatgggttttctatggaggctttttctgggctttgggaatttgttaaactttctgctgcttctggtgtta |
14092697 |
T |
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| Q |
110 |
tgctatggta |
119 |
Q |
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| T |
14092698 |
tgctatggta |
14092707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 14104269 - 14104369
Alignment:
| Q |
20 |
gtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgcttctggagttatgctatggta |
119 |
Q |
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|||| ||||| |||||||||||||||||||| || || || || | || ||||||||| || ||||||||| ||||||||| |||||||| ||||| |
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| T |
14104269 |
gtggttgtcccttaacttggactggtttttctatggaggctttctttgatctttgggagtttgctaaactctctgctgcttctggggttatgctctggta |
14104368 |
T |
|
| Q |
120 |
c |
120 |
Q |
| |
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| |
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| T |
14104369 |
c |
14104369 |
T |
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