View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_80 (Length: 360)
Name: NF1271_high_80
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 169 - 346
Target Start/End: Complemental strand, 6786034 - 6785854
Alignment:
| Q |
169 |
ttaattaaccacaatatttccaatgtctacagaaacaacag---aaacaaaacctttctcaactccctcccattcatcgggtaattattttgtgtcgcaa |
265 |
Q |
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| T |
6786034 |
ttaatcaatcacaatacttccaatgtctacggaagcaacagcagaaacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaa |
6785935 |
T |
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| Q |
266 |
gacagtggcaatgacataatgaatgacatagtactatggaggaggaagaaacttggtactattgttctaattgcggcaaca |
346 |
Q |
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| T |
6785934 |
gacagtggcaatgacataatgaatgacatagtactatggaggaggaagaaacttagtgctattgttctaattgtggcaaca |
6785854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 287
Target Start/End: Complemental strand, 6731444 - 6731228
Alignment:
| Q |
78 |
cacattttaaagccaaaatgaaaccatgcaatgctcttatcttacttccatttaatatata----------------ccttagaagttagaacaatatca |
161 |
Q |
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| T |
6731444 |
cacattttaaagcaaaaatgaaaccatgcgatgctcttatcttacttccatataatatatagtcttctattcctataccttagaagttagaacaatatca |
6731345 |
T |
|
| Q |
162 |
tcttcacttaattaaccacaatatttccaatgtctacagaaacaacagaaacaaaacctttctcaactccctcccattcatcgggtaattattttgtgtc |
261 |
Q |
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| T |
6731344 |
tcttcacttaattaaccacaatatttccaatgtctacagaa---------acaaaacctttctcaactccctctcattcatcgggtaattattttgtggc |
6731254 |
T |
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| Q |
262 |
gcaagacagtggcaatgacataatga |
287 |
Q |
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| T |
6731253 |
gcaaaatggtggcaatgacatcatga |
6731228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 346
Target Start/End: Complemental strand, 6761008 - 6760815
Alignment:
| Q |
151 |
gaacaatatcatcttcacttaattaaccacaatatt---tccaatgtctacagaaacaacagaaacaaaacctttctcaactccctcccattcatcgggt |
247 |
Q |
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| T |
6761008 |
gaacaatatcatctttacttaattaatcacaatattatttccaatgtctacagaaacaa---------aacctttctcaactccctctcattcttcatgt |
6760918 |
T |
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| Q |
248 |
aattattttgtgtcgcaagacagtggcaatgacataatgaatgaca--tagta--ctatggaggaggaagaaacttggtactattgttctaattgcggca |
343 |
Q |
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| T |
6760917 |
aataattttgtggcgcaagatggtggcaatggcatgttgaaggacgcgtagtatactatggaggaggaagaaacttagtactattgttctaattgtggca |
6760818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 6728070 - 6728018
Alignment:
| Q |
294 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaaca |
346 |
Q |
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| T |
6728070 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaaca |
6728018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 6731137 - 6731083
Alignment:
| Q |
294 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagc |
348 |
Q |
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| T |
6731137 |
tagtactatggaggaggaagaaacttggtactattgttcttattgcggcaacagc |
6731083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 6786135 - 6786082
Alignment:
| Q |
63 |
agtattttgctacaacacattttaaagccaaaatgaaaccatgcaatgctctta |
116 |
Q |
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| T |
6786135 |
agtattttgctacaacacattttaaagcaaaaaccaaaccatgcgatgctctta |
6786082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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