View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_82 (Length: 348)

Name: NF1271_high_82
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_82
NF1271_high_82
[»] chr1 (2 HSPs)
chr1 (103-193)||(4240307-4240397)
chr1 (204-256)||(4240083-4240135)
[»] chr3 (1 HSPs)
chr3 (146-188)||(19923489-19923531)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 4240397 - 4240307
Alignment:
Q  103 atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240397 atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag 4240307  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 4240135 - 4240083
Alignment:
Q  204 tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240135 tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt 4240083  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 19923531 - 19923489
Alignment:
Q  146 tttttatcatgacacttatactaaactgtgtgtttgaatgaaa 188  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||    
T  19923531 tttttatgatgacacttttactaaactgtttgtttgaatgaaa 19923489  T

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