View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_high_86 (Length: 342)
Name: NF1271_high_86
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_86 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 894972 - 894631
Alignment:
| Q |
1 |
ttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894972 |
ttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacccct |
894873 |
T |
|
| Q |
101 |
ccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgttttggg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894872 |
ccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgttttggg |
894773 |
T |
|
| Q |
201 |
agtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagtaagaaattcttgtgggttgttagagttccaagtaaag |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
894772 |
agtggtggaacagtttctcatgaacaactcaatgagttagcatttggactagaattgagtggtaagaaattcttgtgggttgttagagttccaagtaaag |
894673 |
T |
|
| Q |
301 |
ttgttagctctgcttattttgttggagaaaaagatgatccat |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
894672 |
ttgttagctctgcttattttgttggagaaaaagatgatccat |
894631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 905671 - 906012
Alignment:
| Q |
1 |
ttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacccct |
100 |
Q |
| |
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|||||||| |||| || | |||||||| ||||||||| || || || |||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
905671 |
ttgatggttttataatcagcactttcactgatttggagccagatgttataagggttcttcaagaaaaagagaaaccttgtgtttatccagtgggacccat |
905770 |
T |
|
| Q |
101 |
ccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgttttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
905771 |
tattagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaacctccaaattctgttctttatgtatgttttggg |
905870 |
T |
|
| Q |
201 |
agtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagtaagaaattcttgtgggttgttagagttccaagtaaag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||| |
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| T |
905871 |
agtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaaaaagttcttgtgggttgttagagttccaagtaaag |
905970 |
T |
|
| Q |
301 |
ttgttagctctgcttattttgttggagaaaaagatgatccat |
342 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
905971 |
atgttaactctgcttattttgttggagcaaaagatgatccat |
906012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 564051 - 563983
Alignment:
| Q |
195 |
tttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagt |
263 |
Q |
| |
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||||| |||||||||||| ||||||| | ||| |||||||||||||||| || |||||||||||||| |
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| T |
564051 |
tttggtagtggtggaacaatttctcaaaaccaaatgaatgagttagcattagggttagaattgagtagt |
563983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 8294921 - 8294626
Alignment:
| Q |
1 |
ttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacccct |
100 |
Q |
| |
|
||||||||||||| || || ||||||| |||||||||||| || ||||||||| |||||||||| | |||||||||| || ||||||| || ||||| | |
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| T |
8294921 |
ttgatggtgttattatgaatactttcactgatttggaaccggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacctat |
8294822 |
T |
|
| Q |
101 |
ccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgttttggg |
200 |
Q |
| |
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|| |||||||| ||| ||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| | |||||| |
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| T |
8294821 |
gattaggaatgagtcaaataatgaagcaaacatg---tcaatgtgtttaaggtggttggaaaatcaacaaccaagttctgttctttttgtctcttttgga |
8294725 |
T |
|
| Q |
201 |
agtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagtaagaaattcttgtgggttgttagagttccaagtaaa |
299 |
Q |
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|||||||||||| | ||||| || ||||| || |||||||| ||||| |||||||||||| || | ||||||||||||||||| |||| |||||||||| |
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| T |
8294724 |
agtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggttgtgagagctccaagtaaa |
8294626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 33256834 - 33257150
Alignment:
| Q |
1 |
ttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacccct |
100 |
Q |
| |
|
||||||||||||| || || ||||||| | ||||||||| || | | ||||| | |||||||| | |||||||||| || ||| ||| || ||||| | |
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| T |
33256834 |
ttgatggtgttataatcaatactttcagtaatttggaactggaagccgtaagggtacttcaagacagagagaaacctagtgtttttccggttggacctat |
33256933 |
T |
|
| Q |
101 |
ccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgttttggg |
200 |
Q |
| |
|
| ||||||||||| ||| ||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||| ||| ||| | ||||| |
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| T |
33256934 |
cattagaaatgagtcaaataatgaagcaaacatg---tcagtgtgtttaaggtggttggaaaatcagccaccaagttctgttatttttgtctcctttgga |
33257030 |
T |
|
| Q |
201 |
agtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagtaagaaattcttgtgggttgttagagttccaagtaaag |
300 |
Q |
| |
|
|||||||||||| | ||||| || ||||| ||||||||||| ||||| |||||||||||| || | || |||||||||||||| |||| |||||||||| |
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|
| T |
33257031 |
agtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtggtcacaagttcttgtgggttgtgagagctccaagtaaac |
33257130 |
T |
|
| Q |
301 |
ttgttagctctgcttatttt |
320 |
Q |
| |
|
| ||| |||||||||||| |
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|
| T |
33257131 |
attctagttctgcttatttt |
33257150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 952 - 1268
Alignment:
| Q |
1 |
ttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacccct |
100 |
Q |
| |
|
||||||||||||| || || ||||||| | ||||||||| || | | ||||| | |||||||| | |||||||||| || ||| ||| || ||||| | |
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|
| T |
952 |
ttgatggtgttataatcaatactttcagtaatttggaactggaagccgtaagggtacttcaagacagagagaaacctagtgtttttccggttggacctat |
1051 |
T |
|
| Q |
101 |
ccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgttttggg |
200 |
Q |
| |
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| ||||||||||| ||| ||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||| ||| ||| | ||||| |
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|
| T |
1052 |
cattagaaatgagtcaaataatgaagcaaacatg---tcagtgtgtttaaggtggttggaaaatcagccaccaagttctgttatttttgtctcctttgga |
1148 |
T |
|
| Q |
201 |
agtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagtaagaaattcttgtgggttgttagagttccaagtaaag |
300 |
Q |
| |
|
|||||||||||| | ||||| || ||||| ||||||||||| ||||| |||||||||||| || | || |||||||||||||| |||| |||||||||| |
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|
| T |
1149 |
agtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtggtcacaagttcttgtgggttgtgagagctccaagtaaac |
1248 |
T |
|
| Q |
301 |
ttgttagctctgcttatttt |
320 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
1249 |
attctagttctgcttatttt |
1268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 16490675 - 16490752
Alignment:
| Q |
194 |
ttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggactagaattgagtagtaagaaatt |
271 |
Q |
| |
|
|||||| |||||||||||| |||| || || ||| ||||||||||||| | ||| ||||||||||| |||| ||||| |
|
|
| T |
16490675 |
ttttggaagtggtggaacactttcacaagagcaagtgaatgagttagcttatgggttagaattgagtggtaaaaaatt |
16490752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 11933 - 11881
Alignment:
| Q |
195 |
tttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttgg |
247 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| | ||||||||||| ||||| |
|
|
| T |
11933 |
tttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgg |
11881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 60911 - 60963
Alignment:
| Q |
195 |
tttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttgg |
247 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| | ||||||||||| ||||| |
|
|
| T |
60911 |
tttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgg |
60963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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