View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_9 (Length: 645)

Name: NF1271_high_9
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_9
NF1271_high_9
[»] chr5 (5 HSPs)
chr5 (11-526)||(29597649-29598164)
chr5 (31-526)||(29647126-29647629)
chr5 (31-526)||(29641808-29642312)
chr5 (405-524)||(29821097-29821222)
chr5 (479-524)||(42297559-42297604)
[»] chr7 (11 HSPs)
chr7 (172-352)||(19326252-19326429)
chr7 (484-525)||(36254804-36254845)
chr7 (484-525)||(36262479-36262520)
chr7 (481-525)||(36259673-36259717)
chr7 (480-521)||(20495208-20495249)
chr7 (478-527)||(21219282-21219331)
chr7 (492-524)||(661257-661289)
chr7 (480-524)||(18325699-18325743)
chr7 (480-524)||(18515446-18515490)
chr7 (96-156)||(19326161-19326221)
chr7 (481-521)||(20455944-20455984)
[»] chr4 (8 HSPs)
chr4 (480-525)||(19356933-19356978)
chr4 (477-521)||(35766435-35766479)
chr4 (489-526)||(8437724-8437761)
chr4 (489-526)||(8444032-8444069)
chr4 (489-526)||(8448240-8448277)
chr4 (487-524)||(11971579-11971616)
chr4 (480-525)||(19355346-19355391)
chr4 (480-513)||(19358569-19358602)
[»] chr6 (1 HSPs)
chr6 (96-156)||(24254602-24254662)
[»] chr3 (1 HSPs)
chr3 (251-303)||(3625415-3625467)


Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Original strand, 29597649 - 29598164
Alignment:
11 caaaggcggtccagcaaaacagcaatagttggttcagtatatggtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtag 110  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29597649 caaaggcggtccagcaaaacagcaatagttggttcagtatatcgtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtag 29597748  T
111 caagatcaagcgagataatcgcaaatttctcaacagtaaaatcctttggataaatggaaatccagttaacagtgccactcaaatgcactgcttggttcac 210  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
29597749 caagatcaagcgagataatcacaaatttctcaacagtaacatccttcagataaatggatatccagttaacagtgccactcaaatgcactccttggttcac 29597848  T
211 ataactacagccaagggtatcaagaaggttataaggagtaaaacttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctccctagaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
29597849 ataactacagccaagggtatcaagaaggttataaggagtaaaacttacaatttttctccaaatattatcaccgaaacggaaaactttcacctccctagaa 29597948  T
311 cacaaaaccacagcattataagttctagttgaaatatcatacgcgaaggaaaaagttagcttgcctggtccgcaaggttggtgacaagttcctaattttt 410  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
29597949 cacaaaaccacagcattataagttctagttgaaatatcatacccgaaggaaaaagttagcttgcctggtctgcaaggttggtgacaagttcctaattttt 29598048  T
411 tggatattgtccttgtagccgggttccagatatggaaccagaagattgtttcatcatgattccttaggtaagaataaccaagcaaacaaagcaatccatt 510  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29598049 tggatattatccttgtagccgggttccagatatggaaccagaagactgtttcatcatgattccttaggtaagaataaccaagcaaacaaagcaatccatt 29598148  T
511 gcatgaaccaacaact 526  Q
    ||||||||||||||||    
29598149 gcatgaaccaacaact 29598164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 31 - 526
Target Start/End: Complemental strand, 29647629 - 29647126
Alignment:
31 agcaatagttggttcagtatatggtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtagcaagatcaagcgagataatc 130  Q
    |||||||||||||||| ||||||||| |||||||||||| || ||||||||||| | || |||| |||||||||| ||| ||| ||||||||||||||||    
29647629 agcaatagttggttcaatatatggtggcactaaattaactgctccaggagggggtagcagtttcttgtatgtctcggtaccaatatcaagcgagataatc 29647530  T
131 gcaaatttctcaacagtaaaatcctttggataaatggaaatccagttaacagtgccactcaaatgcactgcttg---gttcacataactacagccaaggg 227  Q
    |||||||| |||| ||||| |||||  ||||||||||||||||| ||||||||||||||||||| |||| ||||   |||||||  ||||  ||||||||    
29647529 gcaaatttatcaagagtaacatcctccggataaatggaaatccaattaacagtgccactcaaatacactccttgttggttcacaacactatggccaaggg 29647430  T
228 tatcaagaaggttataaggagtaaaacttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctccctagaacacaaaaccacagcatt 327  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
29647429 tatcaacaaggttataaggagtaaa-cttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctcactagaacacaaaaccacggcatt 29647331  T
328 ataagttctagttgaaatatcatacgcgaaggaaaaagttagcttgcctggtccgcaaggttggtgacaagttcctaattttttggatattgtccttgta 427  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
29647330 ataagttctagttgaattatcatacccgaaggaaaaagtgagcttgcctggtctgcaaggttggtgacaagttcctaattttttggatattatccttgta 29647231  T
428 gccgggttccagatatggaaccagaagattg-tttcatc-----atgattccttaggtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa 521  Q
    ||||||||||||||||||||||||||||||| |||| ||     |||||| |||  |||||||||||| |||||||||||||||| |||||||||||| |    
29647230 gccgggttccagatatggaaccagaagattgttttcttctgaatatgattacttgtgtaagaataaccgagcaaacaaagcaatctattgcatgaaccga 29647131  T
522 caact 526  Q
    |||||    
29647130 caact 29647126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 31 - 526
Target Start/End: Complemental strand, 29642312 - 29641808
Alignment:
31 agcaatagttggttcagtatatggtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtagcaagatcaagcgagataatc 130  Q
    |||||||||||||||||||||||||| |||||||||||| || ||||||||||| | || |||| |||||||||| ||| ||||||||||||||||||||    
29642312 agcaatagttggttcagtatatggtggcactaaattaactgctccaggagggggtagcagtttcttgtatgtctcggtaccaagatcaagcgagataatc 29642213  T
131 gcaaatttctcaacagtaaaatcctttggataaatggaaatccagttaacagtgccactcaaatgcactgcttg---gttcacataactacagccaaggg 227  Q
    |||||||| |||| ||||| |||||  ||||||||||||||||| ||||||||||||||||||| |||| ||||   |||||||  |  |  ||||||||    
29642212 gcaaatttatcaagagtaacatcctccggataaatggaaatccaattaacagtgccactcaaatacactccttgttggttcacaccatcatggccaaggg 29642113  T
228 tatcaagaaggttataaggagtaaaacttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctccctagaacacaaaaccacagcatt 327  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||    
29642112 tatcaacaaggttataaggagtaaaatttgcaatttttctccaaatattatcaccgaaatggaaaactttcacctcactagtacacaaaaccaccgcatt 29642013  T
328 ataagttctagttgaaatatcatacgcgaaggaaaaagttagcttgcctggtccgcaaggttggtgacaagttcctaattttttggatattgtccttgta 427  Q
    |||||||||||||||| |||||||| |||| |||||| | ||||||  |     |||||||||||||||||||||||||||||  |||||| |||||||     
29642012 ataagttctagttgaattatcatacccgaatgaaaaactgagcttgaataaattgcaaggttggtgacaagttcctaatttttccgatattatccttgtg 29641913  T
428 gccgggttccagatatggaaccagaagattgtttcatc------atgattccttaggtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa 521  Q
    || |||||||||||| ||||||||||||||||||||||      |||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
29641912 gctgggttccagatacggaaccagaagattgtttcatcctgattatgattacttgagtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa 29641813  T
522 caact 526  Q
    |||||    
29641812 caact 29641808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 405 - 524
Target Start/End: Original strand, 29821097 - 29821222
Alignment:
405 attttttggatattgtccttgtagccgggttccagatatggaaccagaagattgtttcatc------atgattccttaggtaagaataaccaagcaaaca 498  Q
    |||||||||||||| |||| || || ||||||||||| |||||||||||||| ||||||||      |||||| |||  |||||||||||  ||||||||    
29821097 attttttggatattatcctagtggctgggttccagatctggaaccagaagatcgtttcatcccgattatgattacttgtgtaagaataactgagcaaaca 29821196  T
499 aagcaatccattgcatgaaccaacaa 524  Q
    ||||||||||||||||||||||||||    
29821197 aagcaatccattgcatgaaccaacaa 29821222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 524
Target Start/End: Complemental strand, 42297604 - 42297559
Alignment:
479 taagaataaccaagcaaacaaagcaatccattgcatgaaccaacaa 524  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
42297604 taagaataaccgagcaaacaaatcaatccattgcatgaaccaacaa 42297559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 172 - 352
Target Start/End: Original strand, 19326252 - 19326429
Alignment:
172 ccagttaacagtgccactcaaatgcactgcttggttcacataactacagccaagggtatcaagaaggttataaggagtaaaacttgcaatttttctccaa 271  Q
    ||||||||| ||||||||||||| |||| ||| ||||   | |||| ||||||| ||| ||  | ||| | |||||| ||| |||| |||||||||||||    
19326252 ccagttaactgtgccactcaaatacactccttcgttc---ttactaaagccaagagtaacagcatggtcaaaaggaggaaagcttgaaatttttctccaa 19326348  T
272 atattatcaccgaaacggaaaactttcacctccctagaacacaaaaccacagcattataagttctagttgaaatatcatac 352  Q
    ||||||||||  |||| ||||||||||||||| ||||||| ||| | |||  | |||||||||| ||||||| ||||||||    
19326349 atattatcactcaaactgaaaactttcacctcactagaactcaagagcaccaccttataagttccagttgaattatcatac 19326429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 525
Target Start/End: Complemental strand, 36254845 - 36254804
Alignment:
484 ataaccaagcaaacaaagcaatccattgcatgaaccaacaac 525  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
36254845 ataactaagcaaacaaagcaatccattgcaagaaccaacaac 36254804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 525
Target Start/End: Complemental strand, 36262520 - 36262479
Alignment:
484 ataaccaagcaaacaaagcaatccattgcatgaaccaacaac 525  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
36262520 ataaccaagcaaacaaagcaacccattgcaagaaccaacaac 36262479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 36259717 - 36259673
Alignment:
481 agaataaccaagcaaacaaagcaatccattgcatgaaccaacaac 525  Q
    |||||||||||||||||| ||||||||||| || |||||||||||    
36259717 agaataaccaagcaaacagagcaatccattacaagaaccaacaac 36259673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 521
Target Start/End: Complemental strand, 20495249 - 20495208
Alignment:
480 aagaataaccaagcaaacaaagcaatccattgcatgaaccaa 521  Q
    ||||| ||||||||||||||||| |||||||||| |||||||    
20495249 aagaaaaaccaagcaaacaaagccatccattgcaagaaccaa 20495208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 21219282 - 21219331
Alignment:
478 gtaagaataaccaagcaaacaaagcaatccattgcatgaaccaacaactt 527  Q
    ||||||||||||  ||||||| | |||||||||||| |||||||||||||    
21219282 gtaagaataaccgcgcaaacagaccaatccattgcaggaaccaacaactt 21219331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 492 - 524
Target Start/End: Original strand, 661257 - 661289
Alignment:
492 gcaaacaaagcaatccattgcatgaaccaacaa 524  Q
    |||||||||||||||||||||| ||||||||||    
661257 gcaaacaaagcaatccattgcaagaaccaacaa 661289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 524
Target Start/End: Complemental strand, 18325743 - 18325699
Alignment:
480 aagaataaccaagcaaacaaagcaatccattgcatgaaccaacaa 524  Q
    |||||||||| ||||| || |||||||||||||| ||||||||||    
18325743 aagaataacctagcaagcatagcaatccattgcaagaaccaacaa 18325699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 524
Target Start/End: Original strand, 18515446 - 18515490
Alignment:
480 aagaataaccaagcaaacaaagcaatccattgcatgaaccaacaa 524  Q
    ||||| |||| |||||||| | |||||||||||||||||||||||    
18515446 aagaacaaccgagcaaacagaccaatccattgcatgaaccaacaa 18515490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 19326161 - 19326221
Alignment:
96 tgtatgtctcagtagcaagatcaagcgagataatcgcaaatttctcaacagtaaaatcctt 156  Q
    |||||||||||||| |||||||||| |||||||||  ||||| ||| || |||| ||||||    
19326161 tgtatgtctcagtaccaagatcaagggagataatcataaattgctcgacggtaatatcctt 19326221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 20455984 - 20455944
Alignment:
481 agaataaccaagcaaacaaagcaatccattgcatgaaccaa 521  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
20455984 agaataaccaagcaagcaaaccaatccattgcaggaaccaa 20455944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 19356978 - 19356933
Alignment:
480 aagaataaccaagcaaacaaagcaatccattgcatgaaccaacaac 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
19356978 aagaataaccaagcaaacaaagcaatccattgcaagaaccaacaac 19356933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 521
Target Start/End: Complemental strand, 35766479 - 35766435
Alignment:
477 ggtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa 521  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
35766479 ggtaagaataaccaagcaaacaaagccatccattgcatgaaccaa 35766435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 8437724 - 8437761
Alignment:
489 caagcaaacaaagcaatccattgcatgaaccaacaact 526  Q
    ||||||| || |||||||||||||||||||||||||||    
8437724 caagcaagcatagcaatccattgcatgaaccaacaact 8437761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 8444032 - 8444069
Alignment:
489 caagcaaacaaagcaatccattgcatgaaccaacaact 526  Q
    ||||||| || |||||||||||||||||||||||||||    
8444032 caagcaagcagagcaatccattgcatgaaccaacaact 8444069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 8448240 - 8448277
Alignment:
489 caagcaaacaaagcaatccattgcatgaaccaacaact 526  Q
    ||||||| || |||||||||||||||||||||||||||    
8448240 caagcaagcatagcaatccattgcatgaaccaacaact 8448277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 524
Target Start/End: Original strand, 11971579 - 11971616
Alignment:
487 accaagcaaacaaagcaatccattgcatgaaccaacaa 524  Q
    ||||||||| ||||||||||||||||| ||||||||||    
11971579 accaagcaagcaaagcaatccattgcacgaaccaacaa 11971616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 19355391 - 19355346
Alignment:
480 aagaataaccaagcaaacaaagcaatccattgcatgaaccaacaac 525  Q
    |||||||||||||||||||||| |||| || ||| |||||||||||    
19355391 aagaataaccaagcaaacaaagaaatcgatcgcaagaaccaacaac 19355346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 513
Target Start/End: Complemental strand, 19358602 - 19358569
Alignment:
480 aagaataaccaagcaaacaaagcaatccattgca 513  Q
    ||||||||||||||||||||||||||| ||||||    
19358602 aagaataaccaagcaaacaaagcaatcgattgca 19358569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 24254602 - 24254662
Alignment:
96 tgtatgtctcagtagcaagatcaagcgagataatcgcaaatttctcaacagtaaaatcctt 156  Q
    |||||||||||||| |||||||||| |||||||||   |||| |||||| |||| ||||||    
24254602 tgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt 24254662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 3625467 - 3625415
Alignment:
251 aaacttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctc 303  Q
    |||||| |||| |||||||||| ||||||||| |||| || ||||||||||||    
3625467 aaactttcaatatttctccaaacattatcaccaaaactgagaactttcacctc 3625415  T

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