View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_92 (Length: 327)
Name: NF1271_high_92
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_92 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 292
Target Start/End: Complemental strand, 39378292 - 39378071
Alignment:
| Q |
70 |
ggaactggcatgtggcaagggagtgagagttttgatgtaccgtcaaagaaatgtgatgcatcgctttggttgggagatcctgcc-ggtgttaacaaaaat |
168 |
Q |
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| T |
39378292 |
ggaactggcatgtggcaggggagtaagaattttgatgtcctgtcaaagaaatgtgctgcaccgcattggttgagatatcctgccgggtgtttgcagcaat |
39378193 |
T |
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| Q |
169 |
ttgatttatttagcacctgtagctttgcaatcagtgcataattgtctcaattgaacagaggactaatatgtatttgtttgaaatttatgggatgggtatg |
268 |
Q |
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| T |
39378192 |
tcgatttttttagtacatgtagttttgc-atcagtgcataactgtctcaattagatagaggtctaatatgtatttgtttg-aatttatggggtggatatg |
39378095 |
T |
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| Q |
269 |
ctctatgattgaatttatcaatga |
292 |
Q |
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| T |
39378094 |
ctgtatgattgaatgtatcaatga |
39378071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 3566501 - 3566638
Alignment:
| Q |
15 |
actaatgaaggaatgatgaaggcatgagaccatgtgccagtattgttgtgtgttcggaactg--gcatgtggcaagggagtgagagttttgatgtaccgt |
112 |
Q |
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| T |
3566501 |
actaatgaaagaatgatgaaggcatgaaaccatgtgccaatatttttgtgtgttcagaactgatgtatgtggcgagggagtgagaattttgatgtactgt |
3566600 |
T |
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| Q |
113 |
caaagaaatgtgatgcatcgctttggttgggagatcct |
150 |
Q |
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| T |
3566601 |
caacgaaatgtgctgcactgctttggttgggatatcct |
3566638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 3566654 - 3566735
Alignment:
| Q |
217 |
aattgaacagaggactaatatgtatttgtttgaaatttatgggatgggtatgctctatgattgaatttatcaatgatggcag |
298 |
Q |
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| T |
3566654 |
aattggacagagcactaatatgtatttgtttgaaatttatgggatggttatgctgtatgatcgaatgtatcaatggtggcag |
3566735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 3560310 - 3560271
Alignment:
| Q |
198 |
atcagtgcataattgtctcaattgaacagaggactaatat |
237 |
Q |
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| T |
3560310 |
atcagtgcataattgtctcaattggacagaggactaatat |
3560271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 3560424 - 3560367
Alignment:
| Q |
28 |
tgatgaaggcatgagaccatgtgccagtattgttgtgtgttcggaactggcatgtggc |
85 |
Q |
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| T |
3560424 |
tgatgaatacatgagaccatattccaatattgatgtgtgttcggaactggaatgtggc |
3560367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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