View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_100 (Length: 362)
Name: NF1271_low_100
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_100 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 84 - 301
Target Start/End: Original strand, 26537167 - 26537384
Alignment:
| Q |
84 |
agtatttgttccagaaatctacctcgctcatcttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctgatattttat |
183 |
Q |
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| T |
26537167 |
agtatttgttccagaaatctacctcgctcatgttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctgatattttat |
26537266 |
T |
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| Q |
184 |
ttctcgagtcaattgaaatttaactatatttatccgaccgtcactagtagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgtttt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26537267 |
ttctcgagtcaattgaaatttaactatatttatccgaccgtcactagtagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgtgtt |
26537366 |
T |
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| Q |
284 |
aactttcggctttcatct |
301 |
Q |
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|||||||||||||||||| |
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| T |
26537367 |
aactttcggctttcatct |
26537384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 40355494 - 40355564
Alignment:
| Q |
231 |
tagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgttttaactttcggctttcatct |
301 |
Q |
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| T |
40355494 |
tagtaggctttgtgtcgaagatcaaagaatttttaaatccaatcctttgttttaactttcggctttcatct |
40355564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 40351165 - 40351224
Alignment:
| Q |
115 |
cttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctg |
174 |
Q |
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| T |
40351165 |
cttactgggtacaaaattgaggaatgcctggtgaactgctggtttgagggcaaaaatctg |
40351224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 40351019 - 40351051
Alignment:
| Q |
84 |
agtatttgttccagaaatctacctcgctcatct |
116 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40351019 |
agtatttgttccagaaatctacctcgctcatct |
40351051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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