View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_102 (Length: 349)

Name: NF1271_low_102
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_102
NF1271_low_102
[»] chr6 (3 HSPs)
chr6 (87-237)||(23999133-23999283)
chr6 (87-237)||(23999815-23999965)
chr6 (87-237)||(24000497-24000647)
[»] scaffold0018 (1 HSPs)
scaffold0018 (141-244)||(63065-63170)
[»] chr7 (1 HSPs)
chr7 (155-244)||(1375697-1375786)
[»] chr4 (1 HSPs)
chr4 (155-244)||(27919930-27920019)
[»] chr8 (3 HSPs)
chr8 (155-244)||(18814677-18814766)
chr8 (14-65)||(7314050-7314102)
chr8 (243-339)||(18814869-18814966)
[»] chr1 (2 HSPs)
chr1 (155-244)||(16968708-16968797)
chr1 (155-195)||(25975266-25975306)
[»] chr3 (1 HSPs)
chr3 (155-238)||(13904284-13904367)
[»] chr5 (3 HSPs)
chr5 (155-244)||(19764614-19764703)
chr5 (239-293)||(19764799-19764854)
chr5 (93-147)||(11955900-11955954)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 23999133 - 23999283
Alignment:
Q  87 tatgtcagggggagccatcatcaactatttgagatcatcataaagtgggagattgaagcctccacaagtactttttatgtttttgatgatgttctttagc 186  Q
    |||||| |||||||| |||||||||||||||| ||||||| |||| |||||||| |||||||||||  ||||||||||||||||||||||||| ||||||    
T  23999133 tatgtcggggggagctatcatcaactatttgacatcatcaaaaagggggagattcaagcctccacatttactttttatgtttttgatgatgttatttagc 23999232  T
Q  187 ttagtttattgttttaataatttccttatcattagcatgtaatagcaccca 237  Q
    ||| ||||||||||||||| || |||||| |||||||||||| ||||||||    
T  23999233 ttaatttattgttttaatagttgccttatgattagcatgtaaaagcaccca 23999283  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 23999815 - 23999965
Alignment:
Q  87 tatgtcagggggagccatcatcaactatttgagatcatcataaagtgggagattgaagcctccacaagtactttttatgtttttgatgatgttctttagc 186  Q
    |||||| |||||||| |||||||||||||||| ||||||| |||| |||||||| |||||||||||  ||||||||||||||||||||||||| ||||||    
T  23999815 tatgtcggggggagctatcatcaactatttgacatcatcaaaaagggggagattcaagcctccacatttactttttatgtttttgatgatgttatttagc 23999914  T
Q  187 ttagtttattgttttaataatttccttatcattagcatgtaatagcaccca 237  Q
    ||| ||||||||||||||| || |||||| |||||||||||| ||||||||    
T  23999915 ttaatttattgttttaatagttgccttatgattagcatgtaaaagcaccca 23999965  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 24000497 - 24000647
Alignment:
Q  87 tatgtcagggggagccatcatcaactatttgagatcatcataaagtgggagattgaagcctccacaagtactttttatgtttttgatgatgttctttagc 186  Q
    |||||| |||||||| |||||||||||||||| ||||||| |||| |||||||| |||||||||||  ||||||||||||||||||||||||| |||||     
T  24000497 tatgtcggggggagctatcatcaactatttgacatcatcaaaaagggggagattcaagcctccacatttactttttatgtttttgatgatgttatttagt 24000596  T
Q  187 ttagtttattgttttaataatttccttatcattagcatgtaatagcaccca 237  Q
    ||| ||||||||||||||| ||  ||||| |||||||||||| ||||||||    
T  24000597 ttaatttattgttttaatagttgtcttatgattagcatgtaaaagcaccca 24000647  T

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Target: scaffold0018 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 63065 - 63170
Alignment:
Q  141 gaagcctccacaagt--actttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccag 238  Q
    ||||||||||||| |  ||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||  ||||||||| | ||||||||     
T  63065 gaagcctccacaattttactttatatgtttttgatgatgctctttagcctagtttattgttttaataattgccttatggttagcatgttaaagcacccaa 63164  T
Q  239 catcta 244  Q
    ||||||    
T  63165 catcta 63170  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 1375697 - 1375786
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccagcatcta 244  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||   |||||||| |||||| ||| ||||||    
T  1375697 tactttatatgtttttgatgatgttctttagcttagtttatcgttttaataattgccttatggctagcatgttatagcatccatcatcta 1375786  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 27920019 - 27919930
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccagcatcta 244  Q
    |||||| |||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||  ||||||||| |  ||||||||||||||    
T  27920019 tactttatatgtttttgttgatgttctttagtttagtttatcgttttaataattgccttattgttagcatgttaaggcacccagcatcta 27919930  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 18814677 - 18814766
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccagcatcta 244  Q
    |||||| ||||||||| |||||||||||||||| |||||||  ||||||||||| |||||| |||||||||| | || ||||| ||||||    
T  18814677 tactttatatgttttttatgatgttctttagctcagtttatcattttaataattgccttatgattagcatgttaaaggacccaacatcta 18814766  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 7314050 - 7314102
Alignment:
Q  14 ttagtgaacaaattaatcatgt-agtttcagcaatacctgattgagggtttgc 65  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7314050 ttagtgaacaaattaatcatgttagtttcagcaatacctgattgagggtttgc 7314102  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 18814869 - 18814966
Alignment:
Q  243 taagtctct-actatagatgaatcgattcagaacttcttgaatcatatcacactttgatcgattcatttcaatctgaatcgtctcacaaaactctctg 339  Q
    ||||||||| |||| | ||||||||||||| |||| |||||||||||||||| ||  |||||||| ||| | | |||||||| |||||||||||||||    
T  18814869 taagtctctgactacaaatgaatcgattcacaactccttgaatcatatcacatttgaatcgattctttttagtttgaatcgtttcacaaaactctctg 18814966  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 16968708 - 16968797
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccagcatcta 244  Q
    |||||| ||||||||||||||||||||||||||| ||||||  |||| |||||| |||| |  ||||||||| | |||||||||||||||    
T  16968708 tactttatatgtttttgatgatgttctttagctttgtttatcttttttataattaccttgtggttagcatgttaaagcacccagcatcta 16968797  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 25975306 - 25975266
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttat 195  Q
    |||||| ||| |||||||||||||||||||| |||||||||    
T  25975306 tactttatatatttttgatgatgttctttagtttagtttat 25975266  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 13904284 - 13904367
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccag 238  Q
    |||||| ||||||||||||||||| |  |||||||||||||  ||||||| ||| ||||||  ||||||||| | |||||||||    
T  13904284 tactttatatgtttttgatgatgtcccctagcttagtttatcattttaatgattgccttatggttagcatgttaaagcacccag 13904367  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 19764614 - 19764703
Alignment:
Q  155 tactttttatgtttttgatgatgttctttagcttagtttattgttttaataatttccttatcattagcatgtaatagcacccagcatcta 244  Q
    |||||| ||||||||| |||||||||||||| ||||||||| |||| | ||||| |  |||  ||||||||| | |||||||| ||||||    
T  19764614 tactttatatgttttttatgatgttctttagtttagtttatcgtttcattaattgcaatatggttagcatgttaaagcacccaacatcta 19764703  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 19764799 - 19764854
Alignment:
Q  239 catctaagtctct-actatagatgaatcgattcagaacttcttgaatcatatcaca 293  Q
    ||||||||||||| |||| ||||||||||||||| |||| |||||||| |||||||    
T  19764799 catctaagtctctgactacagatgaatcgattcacaactccttgaatcgtatcaca 19764854  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 11955900 - 11955954
Alignment:
Q  93 agggggagccatcatcaactatttgagatcatcataaagtgggagattgaagcct 147  Q
    ||||| |||||||||||||||||||| ||||| | ||||  ||||||||||||||    
T  11955900 aggggcagccatcatcaactatttgacatcataaaaaaggaggagattgaagcct 11955954  T

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