View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_103 (Length: 348)

Name: NF1271_low_103
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_103
NF1271_low_103
[»] chr1 (2 HSPs)
chr1 (103-193)||(4240307-4240397)
chr1 (204-256)||(4240083-4240135)
[»] chr3 (1 HSPs)
chr3 (146-188)||(19923489-19923531)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 4240397 - 4240307
Alignment:
Q  103 atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240397 atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag 4240307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 4240135 - 4240083
Alignment:
Q  204 tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240135 tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt 4240083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 19923531 - 19923489
Alignment:
Q  146 tttttatcatgacacttatactaaactgtgtgtttgaatgaaa 188  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||    
T  19923531 tttttatgatgacacttttactaaactgtttgtttgaatgaaa 19923489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University