View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_106 (Length: 347)

Name: NF1271_low_106
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_106
NF1271_low_106
[»] chr5 (2 HSPs)
chr5 (1-340)||(3280247-3280586)
chr5 (161-223)||(6126873-6126935)
[»] chr1 (2 HSPs)
chr1 (114-223)||(17556755-17556864)
chr1 (161-223)||(26471084-26471146)
[»] chr8 (4 HSPs)
chr8 (159-198)||(3236383-3236422)
chr8 (161-223)||(32211382-32211444)
chr8 (158-223)||(8587216-8587281)
chr8 (175-223)||(7012234-7012282)
[»] chr7 (4 HSPs)
chr7 (161-223)||(4790297-4790359)
chr7 (175-223)||(9575472-9575520)
chr7 (158-206)||(18102936-18102984)
chr7 (175-223)||(28536770-28536818)
[»] chr6 (2 HSPs)
chr6 (161-223)||(35031020-35031082)
chr6 (160-204)||(9220600-9220644)
[»] chr4 (4 HSPs)
chr4 (161-223)||(41615695-41615757)
chr4 (122-223)||(41594665-41594765)
chr4 (131-199)||(43541890-43541956)
chr4 (158-226)||(51531517-51531585)
[»] chr3 (2 HSPs)
chr3 (161-223)||(33942951-33943013)
chr3 (161-223)||(51406722-51406784)
[»] chr2 (4 HSPs)
chr2 (161-223)||(13344533-13344595)
chr2 (160-206)||(41526301-41526347)
chr2 (172-200)||(10061625-10061653)
chr2 (175-223)||(41492915-41492963)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3280247 - 3280586
Alignment:
Q  1 caaccaacaccgacatgattattgattgaatcaagttaaaagtaattcttttatttcgtgggaaaaagctagaaaactctttattagtaatttagtacgg 100  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3280247 caactaacaccgacatgattattgattgaatcaagttcaaagtaattcttttatttcgtgggaaaaagctagaaaactatttattagtaatttagtacgg 3280346  T
Q  101 cataacttcctaatccctcttgtcccatatataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaatttt 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  3280347 cataacttcctaatccctcttgtcccatatataagttaaatttggatcaataaaattctcatgtacttggtctaaatttttaactagatacatcaatttt 3280446  T
Q  201 gtttgatccaactttctcttatatatctaagggggagaaactatcttgaatgtatgcaataaaattcacaattgtgtgtcagtgtaaattactagtataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280447 gtttgatccaactttctcttatatatctaagggggagaaactatcttgaatgtatgcaataaaattcacaattgtgtgtcagtgtaaattactagtataa 3280546  T
Q  301 gtaaaggggcagcacttactaattttaatgatattcttcg 340  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  3280547 gtaaaggggcagcacttactaattttaatgatattattcg 3280586  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 6126873 - 6126935
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| ||||||||||||||||||||||||| |||  |||| ||||  ||||||||||    
T  6126873 atgtatttggactaaatttttaactagatacatcaacttttgttgacccaaaattctcttata 6126935  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 17556755 - 17556864
Alignment:
Q  114 tccctcttgtcccatatataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaact 213  Q
    ||||||| |||| || ||||||  |||||| | |||| |||| ||  ||||| |||| || |||||||||||||||||||||| |||  |||| |||| |    
T  17556755 tccctctggtcctatttataagagaaagttaggtcaacaaaagttaaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaagt 17556854  T
Q  214 ttctcttata 223  Q
    ||||||||||    
T  17556855 ttctcttata 17556864  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 26471146 - 26471084
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  26471146 atgtatttggactgaatttttaactagatacatcaacttttgttgatccaaaattctcttata 26471084  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 3236422 - 3236383
Alignment:
Q  159 tgatgtacttggtctaaatttttaactagatacatcaatt 198  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  3236422 tgatgtatttggtctaaattttaaactagatacatcaatt 3236383  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 32211444 - 32211382
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || ||||||||||||||||||||||||||  |||| ||||  ||||||||||    
T  32211444 atgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattctcttata 32211382  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 8587216 - 8587281
Alignment:
Q  158 ttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    |||||||| || | ||||||||||||||||||||||||| |||  ||||  ||| |||||||||||    
T  8587216 ttgatgtattttgactaaatttttaactagatacatcaacttttattgactcaagtttctcttata 8587281  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 7012234 - 7012282
Alignment:
Q  175 aatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  7012234 aatttttaactagatacatcaacttttgttgatccaaaattctcttata 7012282  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 4790297 - 4790359
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| ||||||||||||||||||||||||| |||  |||| ||||  ||||||||||    
T  4790297 atgtatttggactaaatttttaactagatacatcaacttttattgacccaaaattctcttata 4790359  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 9575472 - 9575520
Alignment:
Q  175 aatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    |||||||||||||||||||||| |||  |||| | ||||||||||||||    
T  9575472 aatttttaactagatacatcaagttttgttgaccaaactttctcttata 9575520  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 18102984 - 18102936
Alignment:
Q  158 ttgatgtacttggtctaaatttttaactagatacatcaattttgtttga 206  Q
    |||||||| |||||  ||||||||||||| ||||||| |||||||||||    
T  18102984 ttgatgtatttggttcaaatttttaactaaatacatcgattttgtttga 18102936  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 28536818 - 28536770
Alignment:
Q  175 aatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  28536818 aatttttaactagatacatcaacttttattgatccaaaattctcttata 28536770  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 35031082 - 35031020
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || ||||||||||||||||||||||||||  |||| ||||  ||||||||||    
T  35031082 atgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattctcttata 35031020  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 9220644 - 9220600
Alignment:
Q  160 gatgtacttggtctaaatttttaactagatacatcaattttgttt 204  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||||    
T  9220644 gatgtatttggtttaactttttaactagatacatcaactttgttt 9220600  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 41615757 - 41615695
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || |||||||||||| ||||||||| |||  ||||||||| |||||||||||    
T  41615757 atgtatttggacttaatttttaactaaatacatcaacttttgttgatccaattttctcttata 41615695  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 41594665 - 41594765
Alignment:
Q  122 gtcccatatataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctctta 221  Q
    |||||| |||||||  |||||||| |||| |||| || ||||||  ||||| ||||||| ||| ||||||||||| ||   |||| ||||||||||||||    
T  41594665 gtcccacatataagagaaagttgggtcaacaaaagtt-gatgtatatggtccaaattttgaaccagatacatcaacttaagttgacccaactttctctta 41594763  T
Q  222 ta 223  Q
    ||    
T  41594764 ta 41594765  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 43541956 - 43541890
Alignment:
Q  131 ataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaattt 199  Q
    ||||| |||||||||||||| ||||||  |||||| |||||| ||||||| ||| | ||||||||||||    
T  43541956 ataagataaagttggatcaacaaaatt--gatgtatttggtccaaattttaaacgaaatacatcaattt 43541890  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 51531517 - 51531585
Alignment:
Q  158 ttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttatatat 226  Q
    |||||||| |||||| ||||||| ||| ||||||||  |||||  || ||| |||||||||||||||||    
T  51531517 ttgatgtatttggtccaaattttgaacaagatacattcatttttattaatcaaactttctcttatatat 51531585  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 33943013 - 33942951
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || |||||||||||||||||||||| |||  |||| |||| |||||||||||    
T  33943013 atgtatttggactgaatttttaactagatacatcaacttttgttgacccaagtttctcttata 33942951  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 51406722 - 51406784
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || ||||||||||||||||||||||||||  |||| ||||  ||||||||||    
T  51406722 atgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattctcttata 51406784  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 13344533 - 13344595
Alignment:
Q  161 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    ||||| |||| || |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  13344533 atgtatttggactgaatttttaactagatacatcaacttttgttgatccaaaattctcttata 13344595  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 41526301 - 41526347
Alignment:
Q  160 gatgtacttggtctaaatttttaactagatacatcaattttgtttga 206  Q
    |||||| ||| ||||||||||||||||||||||| ||||| ||||||    
T  41526301 gatgtatttgatctaaatttttaactagatacattaatttcgtttga 41526347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 10061653 - 10061625
Alignment:
Q  172 ctaaatttttaactagatacatcaatttt 200  Q
    |||||||||||||||||||||||||||||    
T  10061653 ctaaatttttaactagatacatcaatttt 10061625  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 41492963 - 41492915
Alignment:
Q  175 aatttttaactagatacatcaattttgtttgatccaactttctcttata 223  Q
    |||||||||||||||||||||| |||  |||| |||| |||||||||||    
T  41492963 aatttttaactagatacatcaacttttgttgacccaaatttctcttata 41492915  T

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