View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_107 (Length: 346)
Name: NF1271_low_107
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_107 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 6731137 - 6730813
Alignment:
| Q |
12 |
tagtactatggaggtggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
6731137 |
tagtactatggaggaggaagaaacttggtactattgttcttattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaaattcctcaccct |
6731038 |
T |
|
| Q |
112 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatctacttct |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6731037 |
catctcatggatcactatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttct |
6730938 |
T |
|
| Q |
212 |
aatgcaaattactctatttttccattatgtagactaacacggatacgtaggtactaataataatctgagaaaattgaattgattaaatttaactatatgt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6730937 |
aatgcaaattactctatttttccattatgtagactaacacggatacgcaggtactaataatattctgagaaaattgaagtgattaaatttaactatatgt |
6730838 |
T |
|
| Q |
312 |
atcaatgtttcgtatatgagtatta |
336 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
6730837 |
atcaatgtctcgtatatgagtatta |
6730813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 6728070 - 6727843
Alignment:
| Q |
12 |
tagtactatggaggtggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6728070 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacaacaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
6727971 |
T |
|
| Q |
112 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatctacttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6727970 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttct |
6727871 |
T |
|
| Q |
212 |
aatgcaaattactctatttttccattat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6727870 |
aatgcaaattactctatttttccattat |
6727843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6785917 - 6785676
Alignment:
| Q |
1 |
aatgaacgacatagtactatggaggtggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaac |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||| |
|
|
| T |
6785917 |
aatgaatgacatagtactatggaggaggaagaaacttagtgctattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaac |
6785818 |
T |
|
| Q |
101 |
tttctcactctcatctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctcctt |
200 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6785817 |
ttcctcactctcatctcatggctcgctatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctcctt |
6785718 |
T |
|
| Q |
201 |
catcta---cttctaatgcaaattactctatttttccattat |
239 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6785717 |
cctctacttcttctaatgcaaattactctatttttccattat |
6785676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 6760864 - 6760633
Alignment:
| Q |
15 |
tactatggaggtggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcat |
114 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
6760864 |
tactatggaggaggaagaaacttagtactattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcat |
6760765 |
T |
|
| Q |
115 |
ctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatcta---cttct |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
6760764 |
ctcatggctcgctatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttcttct |
6760665 |
T |
|
| Q |
212 |
aatgcaaattactctatttttccattatgtag |
243 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||| |
|
|
| T |
6760664 |
aatgcatatttctctatttttctattatgtag |
6760633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 6760574 - 6760482
Alignment:
| Q |
243 |
gactaacacggatacgtaggtactaataataatctgagaaaattgaattgattaaatttaactatatgtatcaatgtttcgtatatgagtatt |
335 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||| |||||||||| || ||||||||| |||||||| |||||||| | ||||||||||||||| |
|
|
| T |
6760574 |
gactgacacggatacgtatgcactaataataatttgagaaaatttaagtgattaaatgtaactataggtatcaatatctcgtatatgagtatt |
6760482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 34369550 - 34369586
Alignment:
| Q |
268 |
ataataatctgagaaaattgaattgattaaatttaac |
304 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34369550 |
ataataatttgagaaaattgaattgattaaatataac |
34369586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University