View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_108 (Length: 345)

Name: NF1271_low_108
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_108
NF1271_low_108
[»] chr8 (5 HSPs)
chr8 (36-332)||(7949774-7950069)
chr8 (1-66)||(7949782-7949847)
chr8 (213-308)||(7941033-7941128)
chr8 (213-290)||(7946591-7946669)
chr8 (145-187)||(7946516-7946558)
[»] chr3 (6 HSPs)
chr3 (253-307)||(30137353-30137407)
chr3 (253-307)||(30143482-30143536)
chr3 (253-307)||(30146904-30146958)
chr3 (262-308)||(30173902-30173948)
chr3 (262-307)||(30069294-30069339)
chr3 (262-290)||(30154647-30154675)
[»] chr6 (2 HSPs)
chr6 (146-192)||(6803583-6803629)
chr6 (253-305)||(6786183-6786235)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 36 - 332
Target Start/End: Original strand, 7949774 - 7950069
Alignment:
Q  36 ttgctcaacatacgcttgtttggtaaaacatgtatataatatgttgctcaacatacgcttgtttggtaaaacataaaggaagcattgctatgtccagtat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949774 ttgctcaacatacgcttgtttggtaaaacatgtatataatatgttgctcaacatacgcttgtttggtaaaacataaaggaagcattgctatgtccagtat 7949873  T
Q  136 cagaaagcatctataaattattgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaatggctt 235  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949874 cagaaagcatctataaat-attgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaatggctt 7949972  T
Q  236 atattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtacacactgtcatat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7949973 atattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtatacactgtcatat 7950069  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7949782 - 7949847
Alignment:
Q  1 catacgcttgtttggtaaaacatgtatataatatgttgctcaacatacgcttgtttggtaaaacat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949782 catacgcttgtttggtaaaacatgtatataatatgttgctcaacatacgcttgtttggtaaaacat 7949847  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 7941033 - 7941128
Alignment:
Q  213 tttctttcgataagaaatggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacca 308  Q
    |||||||||  || ||||||||||| ||||  | ||||| |||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||    
T  7941033 tttctttcggaaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattttaaccttatttctcacca 7941128  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 7946591 - 7946669
Alignment:
Q  213 tttctttcgataagaaa-tggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattt 290  Q
    ||||||||||||| ||| |||||||| ||||  | ||||| |||||||| |||||||||||| |||| |||||||||||    
T  7946591 tttctttcgataaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattt 7946669  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 7946516 - 7946558
Alignment:
Q  145 tctataaattattgcatgcaagaatgaactaatgcaacacaaa 187  Q
    ||||||||||||| |||||||||||||||| |||||| |||||    
T  7946516 tctataaattatttcatgcaagaatgaactgatgcaatacaaa 7946558  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 30137407 - 30137353
Alignment:
Q  253 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 307  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30137407 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30137353  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 30143536 - 30143482
Alignment:
Q  253 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 307  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30143536 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30143482  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 30146958 - 30146904
Alignment:
Q  253 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 307  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30146958 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30146904  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 30173948 - 30173902
Alignment:
Q  262 ttcttgcttgccgcattctgtatgtattttaaccatatttctcacca 308  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||||    
T  30173948 ttcttgcttgctgcattctgtatgtatttcaatcatctttctcacca 30173902  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 30069339 - 30069294
Alignment:
Q  262 ttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 307  Q
    ||||||||||||||||||||||||||||| || ||| || ||||||    
T  30069339 ttcttgcttgccgcattctgtatgtatttcaatcatcttcctcacc 30069294  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 30154675 - 30154647
Alignment:
Q  262 ttcttgcttgccgcattctgtatgtattt 290  Q
    |||||||||||||||||||||||||||||    
T  30154675 ttcttgcttgccgcattctgtatgtattt 30154647  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 6803629 - 6803583
Alignment:
Q  146 ctataaattattgcatgcaagaatgaactaatgcaacacaaaactaa 192  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  6803629 ctatatattgttgcatgcaagaatgaaataatgcaacacaaaactaa 6803583  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 6786235 - 6786183
Alignment:
Q  253 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctca 305  Q
    |||||||| ||||||||||||  |||||||||||||||||   ||||||||||    
T  6786235 ttggttgtcttcttgcttgccatattctgtatgtattttagatatatttctca 6786183  T

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