View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_111 (Length: 339)
Name: NF1271_low_111
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_111 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 140 - 327
Target Start/End: Original strand, 177868 - 178055
Alignment:
| Q |
140 |
tttatctgcggtaacaatttgtttgcataacaagttatagagatctgaaagttggtcaaaagaagggaaaattaaagttcttttacattgtttggagtat |
239 |
Q |
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| T |
177868 |
tttatctgcggtaacaatttgtttgcataacaagttatagagatctgaaagttggtcaaaagaagggaaaattaaagttcttttacattgtttggagtat |
177967 |
T |
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| Q |
240 |
ttaagaactatatgattaacatagttgtaaatgaaattaatgaggccatattagcatagttgtacaaagttctctccatttttatatt |
327 |
Q |
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| T |
177968 |
ttaagaactatatgattaacatagttgtaaatgaaattaatgaggccatattagcatacttgtacaaagttctctccatttttatatt |
178055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 177682 - 177800
Alignment:
| Q |
30 |
gttaaactcttttataactaattagatttgttacannnnnnna---aaactttgtgatcaatagaattgaaacatttta----attcttggtcagactta |
122 |
Q |
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| T |
177682 |
gttaaactcttttataactaattagatttgttacatttttttttttaaactttgtgatcaatagaattgaaacattttatttaattcttggtcagactta |
177781 |
T |
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| Q |
123 |
atccttaattcgaagtgtt |
141 |
Q |
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| T |
177782 |
atccttaattcgaagtgtt |
177800 |
T |
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