View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_112 (Length: 338)

Name: NF1271_low_112
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_112
NF1271_low_112
[»] chr7 (1 HSPs)
chr7 (11-98)||(7503672-7503760)
[»] scaffold0041 (1 HSPs)
scaffold0041 (11-98)||(33571-33659)
[»] chr2 (1 HSPs)
chr2 (11-98)||(18293139-18293227)
[»] chr6 (1 HSPs)
chr6 (48-88)||(24158677-24158717)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 7503760 - 7503672
Alignment:
Q  11 cagagaatagagagaaagcacaacaaaacgattctcacctcaagactcca-caaaagatgtgattggattgacaattatgtggtgatga 98  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  7503760 cagagaatagagagaaagcacaacaacacaattcttacctcaagactccataaaaagatgcgattggattgacaattatgtggtgatga 7503672  T

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Target: scaffold0041 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 33571 - 33659
Alignment:
Q  11 cagagaatagagagaaagcacaacaaaacgattctcacctcaagactcca-caaaagatgtgattggattgacaattatgtggtgatga 98  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  33571 cagagaatagagagaaagcataacaacacaattcttacctcaagactccataaaaagatgcgattggattgacaattatgtggtgatga 33659  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 18293139 - 18293227
Alignment:
Q  11 cagagaatagagagaaagcacaacaaaacgattctcacctcaagactcca-caaaagatgtgattggattgacaattatgtggtgatga 98  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||  |||||||| |||||||||||||| |||||||||||||    
T  18293139 cagagaatagagagaaagcacaacaacacaattcttacctcaagactccataaaaagatgcgattggattgacaactatgtggtgatga 18293227  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 24158717 - 24158677
Alignment:
Q  48 cctcaagactccacaaaagatgtgattggattgacaattat 88  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  24158717 cctcaaggctccataaaagatgcgattggattgacaattat 24158677  T

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