View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_115 (Length: 329)
Name: NF1271_low_115
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 40090883 - 40090593
Alignment:
| Q |
29 |
aatgaccacttcccctctaaacacttatgcttatgaaacttattttgctgccttagtaggtgtgtctgttttctcttgtgtcacgggattggaaaataag |
128 |
Q |
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| T |
40090883 |
aatgaccacttcccctctaaacacttatgcttatgaaacttattttgctgccttagtaggtgtgtctgttttctcttgtgtcacgggattggaaaataag |
40090784 |
T |
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| Q |
129 |
agtcataatggcagcatttcatgtgtttcttgttatgatgatagttagtgagtttagaataagtgcttattcttgatggactaatttgtttgtatttcaa |
228 |
Q |
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| T |
40090783 |
agtcataatggcagcatttcatgtgtttcttgttatgatgatagttagtgagtttagaataagtgattattcttgatggactaatttgtttgtatttcaa |
40090684 |
T |
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| Q |
229 |
tttagacttcaagcatatcatagcttgttgttttggtaaacttagattgtgttctctaagttactcatttcatgtattttgtgtctctgtg |
319 |
Q |
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| T |
40090683 |
tttagacttcaagcatatcatagcttgttgttttggtaaatttagattgtgttctctaagttactcatttcatgtattttgtgtctctgtg |
40090593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 54 - 312
Target Start/End: Complemental strand, 40096615 - 40096358
Alignment:
| Q |
54 |
tatgcttatgaaacttattttgctgccttagtaggtgtgtctgttttctcttgtgtcacgggattggaaaataagagtcataatggcagcatttcatgtg |
153 |
Q |
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| T |
40096615 |
tatgcttatgcaacttattttgctgccttagtaggagtgtctgttttctcttgtgtcacggcattggaaaataagagtcataacggcagcattacatgtg |
40096516 |
T |
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| Q |
154 |
tttcttgttatgatgatagttagtgagtttagaataagtgcttattcttgatggactaatttgtttgtatttcaatttagacttcaagcatatcatagct |
253 |
Q |
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| T |
40096515 |
tttcttgttttgatgatagttggtgagtttagaataagtgcttactcttgatggactgatttgtttgtatttcaatttagacttcaagaatatcatagct |
40096416 |
T |
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| Q |
254 |
tgttgttttggtaaacttagattgtgttctctaagttactcatttcatgtattttgtgt |
312 |
Q |
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| T |
40096415 |
tgttgttttggtaaacttagattgtgttctctaagtt-ctcatttcgtatattttgtgt |
40096358 |
T |
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