View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_117 (Length: 326)
Name: NF1271_low_117
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_117 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 87 - 259
Target Start/End: Original strand, 41222087 - 41222269
Alignment:
| Q |
87 |
caaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatactataaaaacaacacattcagactcttctctttctaatcaaactt |
186 |
Q |
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| T |
41222087 |
caaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatactataaaaacaacacattcagactcttctctttctaatcaaactt |
41222186 |
T |
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| Q |
187 |
tgttaat----------tatagtatagtataaattctctaatgatcttgattaccttaatggtcttgttaaagttcctctgtg |
259 |
Q |
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| T |
41222187 |
tgttaattatagtatagtatagtatagtataaattctctaatgatcttgattaccttaatggtcttgttgaagttcctctgtg |
41222269 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 2637104 - 2637053
Alignment:
| Q |
92 |
ctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatact |
143 |
Q |
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| T |
2637104 |
ctgccacgtatgcgtgttcgattgtctgctagtgtctttcggcatgcatact |
2637053 |
T |
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