View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_121 (Length: 323)
Name: NF1271_low_121
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_121 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 32905195 - 32905475
Alignment:
| Q |
30 |
aaaacaaaatcccaaaaggtgcatcttgatcgattcgaaagtgaactaaacccaatttatctaaaattgttgtgtctatgatgaatctggaagtgattta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32905195 |
aaaacaaaatcccaaaaggtgcatcttgatcgattcgaaagtgaactaaacccaatttatctaaaattgttgtgtctatgatgaatctggaagtgattta |
32905294 |
T |
|
| Q |
130 |
atatgtatcacaatgactccataaatctcataatattttttgttatttagattgatctcggacttgattttgaattttttaccgacaaatgttagtggtt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32905295 |
atatgtatcacaatgactccataaatctcataatattttttgttatttagattgatctcggacttgattttgaattttttacggacaaatgttagtggtt |
32905394 |
T |
|
| Q |
230 |
agtttgttataacaattgaaaattaatgttactatattataagaaatcaaacacttgactctacaacatccaaactcatat |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32905395 |
agttggttataacaattgaaaattaatgttactatattataagaaatcaaacacttgactctacaacatccaaactcatat |
32905475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University