View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_123 (Length: 319)
Name: NF1271_low_123
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_123 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 13537949 - 13537802
Alignment:
| Q |
97 |
ataaatcaaacaaccatatcataaacttcaattattgttggtatgacacaacacaaccaagtatacattttacttaataattagggtttgccaaaacgta |
196 |
Q |
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| T |
13537949 |
ataaatcaaacaaccatatcataaacttcaattattattggtatgacacaacacaaccaagtatacattttacttaataattagggtttgccaaaacgta |
13537850 |
T |
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| Q |
197 |
tccctcaatggccttgataagtccagttcctttggtcttagtttcatc |
244 |
Q |
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| T |
13537849 |
tccctcaatggccttgataagtccagttcctttggtcttagtttcatc |
13537802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 13541913 - 13541846
Alignment:
| Q |
174 |
taattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtcttagtttc |
241 |
Q |
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| T |
13541913 |
taattagggtttgccaaaacataaccctcaatggccttgataagtccagttcctttggccttagtttc |
13541846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 13554735 - 13554661
Alignment:
| Q |
170 |
ttaataattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtcttagtttcatc |
244 |
Q |
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| T |
13554735 |
ttaataatcaggatttgccaaaacgtaaccctcaatggccttgataagtccagttcctctggccttagtctcatc |
13554661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 13531009 - 13530945
Alignment:
| Q |
174 |
taattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtcttagt |
238 |
Q |
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| T |
13531009 |
taattagggtttgccaagacgtagccctcaatagccttgataagaccagttcctttggccttagt |
13530945 |
T |
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