View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_124 (Length: 318)

Name: NF1271_low_124

Description: NF1271

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1271_low_124

[»] chr8 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 168; E-Value: 5e-90

Query Start/End: Original strand, 87 - 283

Target Start/End: Original strand, 41222087 - 41222293

Alignment:

Q	87	caaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatactataaaaacaacacattcagactcttctctttctaatcaaactt	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41222087	caaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatactataaaaacaacacattcagactcttctctttctaatcaaactt	41222186	T

Q	187	tgttaat----------tatagtatagtataaattctctaatgatcttgattaccttaatggtcttgttaaagttcctctgtgttctcttagctctgtac	276	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41222187	tgttaattatagtatagtatagtatagtataaattctctaatgatcttgattaccttaatggtcttgttgaagttcctctgtgttctcttagctctgtac	41222286	T

Q	277	ttggaaa	283	Q
		\|\|\|\|\|\|\|
T	41222287	ttggaaa	41222293	T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 92 - 143

Target Start/End: Complemental strand, 2637104 - 2637053

Alignment:

Q	92	ctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatact	143	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	2637104	ctgccacgtatgcgtgttcgattgtctgctagtgtctttcggcatgcatact	2637053	T

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