View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_126 (Length: 317)
Name: NF1271_low_126
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_126 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 126 - 317
Target Start/End: Complemental strand, 43694043 - 43693852
Alignment:
| Q |
126 |
taaggaagcaaaagagtttaaatccttgtccttgtctaagttggttagagccaatatcagttcaaaagatgttccatttactgcgatgtataatattgag |
225 |
Q |
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| T |
43694043 |
taaggaagcaaaagagtttaaatccttgtccttgtctaagttggttagagccaatatcagttcaaaagatgttccatttactgcgatgtataatgttgag |
43693944 |
T |
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| Q |
226 |
tttctatgcatattcctgagaccaggggttaccttcaaaagcattcccgtgtttcaaaacttaattcacattgaactatggttttcttataa |
317 |
Q |
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| T |
43693943 |
tttctatgcatattcctgagaccaggggttaccttcaaaagcattcccgtgctccaaaacttaattcacattgaactatggttttcttataa |
43693852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 130 - 310
Target Start/End: Complemental strand, 43684989 - 43684805
Alignment:
| Q |
130 |
gaagcaaaagagtttaaatccttgtccttgtctaagttggttagagccaatatcagttcaaaagatgttccatttactgcgatgtataatattgagtttc |
229 |
Q |
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| T |
43684989 |
gaagcaaaagagtttaaatccttgtccttgtctaagttggttagagccagtatcagttcaatcgatgttccatttactgcgatttataatgttgagtttc |
43684890 |
T |
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| Q |
230 |
tatgcatattcctgagac----caggggttaccttcaaaagcattcccgtgtttcaaaacttaattcacattgaactatggtttt |
310 |
Q |
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| T |
43684889 |
taagcatacacatgggacatatatagggctaccttcaaaagcattccgttgtttcaaaatttaattcacattgaactatggtttt |
43684805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 24005340 - 24005289
Alignment:
| Q |
259 |
ttcaaaagcattcccgtgtttcaaaacttaattcacattgaactatggtttt |
310 |
Q |
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| T |
24005340 |
ttcaaaagcattcctgtgtttcaaaacttaattaatattcaactatggtttt |
24005289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 23940532 - 23940482
Alignment:
| Q |
259 |
ttcaaaagcattcccgtgtttcaaaacttaattcacattgaactatggttt |
309 |
Q |
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| T |
23940532 |
ttcaaaggcattcctgtgtttcaaaacttaattcatattggactatggttt |
23940482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 25614012 - 25614045
Alignment:
| Q |
275 |
tgtttcaaaacttaattcacattgaactatggtt |
308 |
Q |
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| T |
25614012 |
tgtttcaaaacttaattcacattaaactatggtt |
25614045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 31262139 - 31262188
Alignment:
| Q |
259 |
ttcaaaagcattcccgtgtttcaaaacttaattcacattgaactatggtt |
308 |
Q |
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| T |
31262139 |
ttcaaaaccattccattgtttcaaaatttaattcacattaaactatggtt |
31262188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 17091203 - 17091263
Alignment:
| Q |
130 |
gaagcaaaagagtttaaatccttgtccttgtctaagttggttagagccaatatcagttcaa |
190 |
Q |
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|||||| ||| |||||||| |||| |||| ||||||||||||||||| | |||| |||||| |
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| T |
17091203 |
gaagcagaagggtttaaattcttgaccttttctaagttggttagagcgagtatcggttcaa |
17091263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 28720457 - 28720409
Alignment:
| Q |
259 |
ttcaaaagcattcccgtgtttcaaaacttaattcacattgaactatggt |
307 |
Q |
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| T |
28720457 |
ttcaaaggcattccgttgtttcaaaacttaattcatattgaactatggt |
28720409 |
T |
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