View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_128 (Length: 312)
Name: NF1271_low_128
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_128 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 15758159 - 15758273
Alignment:
| Q |
184 |
caacaaattcatgtttccttccatctgttctcgtttctcgccatttcttgctgatacgttctgtttcagtatttacatactacgtacgtactgtaatcat |
283 |
Q |
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| T |
15758159 |
caacaaattcatgtttcctccgatatgttttcgtttctcgccatttcctgttgatacgttctgtttcagtatttacatac----tacgtactgtaatcat |
15758254 |
T |
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| Q |
284 |
atattattcctagcctatg |
302 |
Q |
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| T |
15758255 |
atattattcctagcctatg |
15758273 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 15756862 - 15756953
Alignment:
| Q |
33 |
tttaatcttcatcttcgacaccaaattcctaatttgccaacaatttatcactc--aaaaattcatcaaactcatattttcattaattcgtct |
122 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||||| |||| |
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| T |
15756862 |
tttaatcttcatcttcaacaccaaatttctaatttgccaacaattcatcactcataaaaattaatcaaactcatatttacattaatttgtct |
15756953 |
T |
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