View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_13 (Length: 601)
Name: NF1271_low_13
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 30 - 517
Target Start/End: Original strand, 38661616 - 38662124
Alignment:
| Q |
30 |
cccaacactgatggaatacacatagaaaataccaatgatgtgaaaatatataattccgtagtttccaatggttagtcactaaataatcaatcccctagct |
129 |
Q |
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| T |
38661616 |
cccaacactgatggaatacacatagaaaataccaatgatgtgaaaatatataattccgtagtttccaatggttagtcactaaataatcaatcccctagct |
38661715 |
T |
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| Q |
130 |
ccttttacctgttgcagcatccaaaggaattaacaaaaatactttttcatgaattttccttttataggtgatgactgtgtttccattgggtctggttgct |
229 |
Q |
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| T |
38661716 |
ccttttacctgttgcagcatccaaaggaattaacaaaaatactttttcatgaattttccttttataggtgatgactgtgtttccattgggtctggttgct |
38661815 |
T |
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| Q |
230 |
atgatgttgatataaaaaatatcacatgtggaccaggtcatggcattaggtaaattattctctccnnnnnnnncttcatgaaaagttacatttaatagta |
329 |
Q |
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| T |
38661816 |
atgatgttgatataaaaaatatcacatgtggaccaggtcatggcattaggtaaattattctctccttttttttcttcatgaaaagttacatttaatagta |
38661915 |
T |
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| Q |
330 |
tggatacgagttgagtgcggtcacaatcccgtggccgcatgcagtcaagctcaatattttagatttcaaagaatctgcgttgaaatctggaatattttat |
429 |
Q |
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| T |
38661916 |
tggatatgagttgagtgcggtcacaaccccgtggccgcatgcagtcaagctcaatattttagatttcaaagaatatgcgttgaaatctggaatatttgat |
38662015 |
T |
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| Q |
430 |
cttgatcaaacgatctagatgt---------------------gtacaatccaaattttcaattaatgagctttatactttatatattgttgtaatggta |
508 |
Q |
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| T |
38662016 |
cttgatcaaacgatctagatgtggttgactgcactcacaccacgtagaatccaaattttcaattaataagctttatactttatatattgttgtaatggta |
38662115 |
T |
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| Q |
509 |
catgattta |
517 |
Q |
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| T |
38662116 |
catgattta |
38662124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 45102537 - 45102462
Alignment:
| Q |
30 |
cccaacactgatggaatacacatagaaaataccaatgatgtgaaaatatataattccgtagtttccaatggttagt |
105 |
Q |
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| T |
45102537 |
cccaacaccgatgggattcacttagaatatgccaatgatgtgaaaatatataattctgtgatttccaatggttagt |
45102462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 45102390 - 45102296
Alignment:
| Q |
188 |
cttttataggtgatgactgtgtttccattgggtctggttgctatgatgttgatataaaaaatatcacatgtggaccaggtcatggcattaggtaa |
282 |
Q |
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| T |
45102390 |
ctttcataggtgatgactgtgtgtccattggaaccgggagctatgatgttgatataaagaacattacttgtggacctagtcatggaattaggtaa |
45102296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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