View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_134 (Length: 296)
Name: NF1271_low_134
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_134 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 30959039 - 30958780
Alignment:
| Q |
9 |
caaaggccct-agttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgt |
107 |
Q |
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| T |
30959039 |
caaaggcccttagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgt |
30958940 |
T |
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| Q |
108 |
ggcaacaaagtaggcagataaataagacaagatatttgtaaagttacaacatttattattgagaataatcacctggcctcaacaatggcatccattgnnn |
207 |
Q |
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| T |
30958939 |
ggcaacaaagtaggcagataaataagacaagatgtttgtaaagttacaacatttattattgagaataatcacctggcctcaacaatggcatccattgttt |
30958840 |
T |
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| Q |
208 |
nnnnctcttgtggactaagccttccatgtcgagttcttgttacctgcaccaacttcttaa |
267 |
Q |
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| T |
30958839 |
ttctctcttgtggactaagccttccatgtcgagttcttgttacctgcgccaacttcttaa |
30958780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 30955172 - 30955067
Alignment:
| Q |
37 |
aaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgtggcaacaaagtaggcagataaataagaca |
136 |
Q |
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| T |
30955172 |
aaactccttcaccatgtcccaaggtccatctccaacaccaaccaatatgattgaaagaggaaattttctgtg---acaaattaagcagataaataagaca |
30955076 |
T |
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| Q |
137 |
agatatttg |
145 |
Q |
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| T |
30955075 |
agatatttg |
30955067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 11689084 - 11689147
Alignment:
| Q |
44 |
ttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgt |
107 |
Q |
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| T |
11689084 |
ttcatcatgtcccatggtccatctccaacaccaaccaatataattgaaagaggaagcttactgt |
11689147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 7474218 - 7474121
Alignment:
| Q |
11 |
aaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgtg |
108 |
Q |
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| T |
7474218 |
aaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaagaggaaatttactgtg |
7474121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 44131205 - 44131152
Alignment:
| Q |
44 |
ttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagagga |
97 |
Q |
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| T |
44131205 |
ttcatctcgtcccatggtccatctccaactccaaccaaaataattgagagagga |
44131152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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