View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_14 (Length: 590)
Name: NF1271_low_14
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 86 - 578
Target Start/End: Complemental strand, 51350671 - 51350159
Alignment:
| Q |
86 |
acatgacacatacttacattcaattttctcaaataattatcgttttcgaacgtgtgagagttttagtattttgacaat---------------------- |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51350671 |
acatgacacatacttacattcaattttctcaaataattatcgttttcgaacgtgtgagagttttagtattgtgacaatgtccgtatctctgtcagtgctt |
51350572 |
T |
|
| Q |
164 |
catatacttattattttgtaattgttcttgaaggtgctggttgtcacggtcaagaattggagggtgaaatagagtcataagtctctccaatttcaatttt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51350571 |
catatacttattattttgtaattgttcttgaaggtgctggttgtcacagtcaagaattggagggtgaaatagagtcataagtctcttcaatttcaatttt |
51350472 |
T |
|
| Q |
264 |
aaattcaggttggagtaaatgtagttatttctattttatattcaataataccagtactacattattagcataccagtatagattatcacaagtggtagat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350471 |
aaattcaggttggagtaaatgtagttatttctattttatattcaataataccagtactacattattagcataccagtatagattatcacaagtggtagat |
51350372 |
T |
|
| Q |
364 |
atcaattaatgcagagatatcttattaattttgtttttactacaagcatcaagattctactgtgctaaattgacaattgcagtaatatattcaccatcat |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51350371 |
atcaattaatgcagagatatcttattaattttgtttttactacaagcatcaagattctactgtgctaaattgacaattgcagtaatatattcacc---at |
51350275 |
T |
|
| Q |
464 |
catcatgagtgcacattcgcattta-ggtgagtttgatagaatcgcggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatca |
562 |
Q |
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|| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350274 |
cactatgagtgcacattcgcatttatggtgaatttgatagaatcgcggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatca |
51350175 |
T |
|
| Q |
563 |
atgtcactgtgatatt |
578 |
Q |
| |
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|||||||||||||||| |
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| T |
51350174 |
atgtcactgtgatatt |
51350159 |
T |
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