View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_140 (Length: 284)
Name: NF1271_low_140
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_140 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 28399 - 28618
Alignment:
| Q |
23 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28399 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
28484 |
T |
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| Q |
123 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28485 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
28584 |
T |
|
| Q |
223 |
cttgtcaagcaaagtgctcttcctgctattttct |
256 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28585 |
cttgtcaagcaaagtgctcttcctgctattttct |
28618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 275509 - 275728
Alignment:
| Q |
23 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
275509 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
275594 |
T |
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| Q |
123 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275595 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
275694 |
T |
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| Q |
223 |
cttgtcaagcaaagtgctcttcctgctattttct |
256 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
275695 |
cttgtcaagcaaagtgctcttcctgctattttct |
275728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 26396113 - 26396333
Alignment:
| Q |
23 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26396113 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
26396198 |
T |
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| Q |
123 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc-ttttcggtgccccttttgtttttgaatcttgaggatcaagtagtt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396199 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtt |
26396298 |
T |
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| Q |
222 |
tcttgtcaagcaaagtgctcttcctgctattttct |
256 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26396299 |
tcttgtcaagcaaagtgctcttcctgctattttct |
26396333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
141 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
225 |
Q |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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