View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_142 (Length: 282)
Name: NF1271_low_142
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_142 |
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| [»] chr5 (9 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 37315740 - 37315474
Alignment:
| Q |
16 |
ataggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttctttacctggaatta |
115 |
Q |
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| T |
37315740 |
ataggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttctttacctggaatta |
37315641 |
T |
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| Q |
116 |
tgttacgtcattaataattttttgacaatattgtaagatcgcataaaaatattaacattttttactttcttttatacctgtaccatgcaaatattgaccc |
215 |
Q |
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| T |
37315640 |
tgttacgtcattaataattttttgacaatattgtaagatcgcataaaaatattaacatttttttctttcttttatacctgtaccatgcaaatattgaccc |
37315541 |
T |
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| Q |
216 |
aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc |
282 |
Q |
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| T |
37315540 |
aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc |
37315474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 37239281 - 37239018
Alignment:
| Q |
18 |
aggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttctttacctggaattatg |
117 |
Q |
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| T |
37239281 |
aggcacagtgtgttcatgaatgtattctaggcctctggctgaatctagagcaatctgcactctactagaccatggtaatggttctgtacctgaaatcatc |
37239182 |
T |
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| Q |
118 |
tta-cgtcattaataattttttgacaatattgtaagatcgcataaaaatattaacattttttactttcttttatacctgtaccatgcaaatattgaccca |
216 |
Q |
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| T |
37239181 |
taaccatcattaatgactgtttgacaatattgtaaaatcacataaaaatattagcacatttttgttaatct--tacctataccatgtaaatattgaccca |
37239084 |
T |
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| Q |
217 |
agtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc |
282 |
Q |
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| T |
37239083 |
agtttccattgtcaatatgttcatatacgaggaaaagtgacccttcaacgcaatatccaatcaacc |
37239018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 37198320 - 37198256
Alignment:
| Q |
216 |
aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa |
280 |
Q |
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| T |
37198320 |
aagtttccattatcaatgtattcatagacaaggaaaagggatccctcaacacagtatccgatcaa |
37198256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 37203328 - 37203257
Alignment:
| Q |
209 |
ttgacccaagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa |
280 |
Q |
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| T |
37203328 |
ttgactcaagtttccattgtcaatgtattcatagacaaggaagagaaaaccttcaacacaatatccaatcaa |
37203257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 37198530 - 37198453
Alignment:
| Q |
25 |
gtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttct |
102 |
Q |
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| T |
37198530 |
gtatgttcgtgaatgtattcaagacctctggctgaatccagagcaattttaaccctgatagaccatgacaaaggttct |
37198453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 37385556 - 37385620
Alignment:
| Q |
216 |
aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa |
280 |
Q |
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| T |
37385556 |
aagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaa |
37385620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37385337 - 37385392
Alignment:
| Q |
18 |
aggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaattt |
73 |
Q |
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| T |
37385337 |
aggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaattt |
37385392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 37203513 - 37203436
Alignment:
| Q |
25 |
gtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttct |
102 |
Q |
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| T |
37203513 |
gtatgttcatgaatatattcaagacctctggctgaatccagcgcaatttgcatccttgtagaccatgacaaaggttct |
37203436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 37223465 - 37223401
Alignment:
| Q |
216 |
aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa |
280 |
Q |
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| T |
37223465 |
aagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaatcaa |
37223401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 36199423 - 36199332
Alignment:
| Q |
191 |
acctgtaccatgcaaatattgacccaagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc |
282 |
Q |
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| T |
36199423 |
acctgaaccacgcaaatgctgactcaagtttccgttctcaatgtattcatagacaaggaaaagagagccttcaatactatatccaatcaacc |
36199332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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