View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_144 (Length: 280)

Name: NF1271_low_144
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_144
NF1271_low_144
[»] chr8 (14 HSPs)
chr8 (124-245)||(25489426-25489547)
chr8 (124-245)||(25646248-25646369)
chr8 (159-245)||(24913783-24913869)
chr8 (124-243)||(25603834-25603951)
chr8 (124-223)||(25799544-25799640)
chr8 (124-186)||(25694637-25694699)
chr8 (28-81)||(25489590-25489643)
chr8 (124-197)||(25321934-25322004)
chr8 (28-81)||(25694742-25694795)
chr8 (28-81)||(25646412-25646465)
chr8 (33-81)||(24913658-24913706)
chr8 (28-81)||(25322047-25322098)
chr8 (28-81)||(25604000-25604053)
chr8 (28-65)||(25799658-25799695)
[»] scaffold0070 (2 HSPs)
scaffold0070 (159-245)||(17826-17910)
scaffold0070 (36-81)||(17704-17749)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 25489547 - 25489426
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  224 attgaatatttctgtcttttat 245  Q
    ||||||||||||||||||||||    
T  25489447 attgaatatttctgtcttttat 25489426  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 25646369 - 25646248
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  224 attgaatatttctgtcttttat 245  Q
     |||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttat 25646248  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 24913783 - 24913869
Alignment:
Q  159 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttat 245  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttat 24913869  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 25603951 - 25603834
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagt-tttt 222  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  223 gattgaatatttctgtctttt 243  Q
    | ||||||||||||| |||||    
T  25603854 ggttgaatatttctgcctttt 25603834  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 223  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25489643 - 25489590
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489643 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 197  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25694795 - 25694742
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25694795 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25646465 - 25646412
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  25646465 cacaaaagcatgtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 24913658 - 24913706
Alignment:
Q  33 aagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  24913658 aagcatgtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25322098 - 25322047
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||    
T  25322098 cacagaagcatgtaaattgtgtgtactgtatccattta--ttgtatcccctctc 25322047  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25604053 - 25604000
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||||| |||||||    
T  25604053 cacagaagcatgtaaatcgtgtgtactatatccatatatattgtataccctctc 25604000  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 25799695 - 25799658
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccattta 65  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  25799695 cacagaagcatgtaaatggtgtgtactgtatccattta 25799658  T

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Target: scaffold0070 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 17826 - 17910
Alignment:
Q  159 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttat 245  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || | ||||| ||||||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttat 17910  T

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Target: scaffold0070; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 17704 - 17749
Alignment:
Q  36 catgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17704 catgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

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