View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_148 (Length: 275)

Name: NF1271_low_148
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_148
NF1271_low_148
[»] chr6 (8 HSPs)
chr6 (1-258)||(22205020-22205277)
chr6 (6-259)||(24385237-24385490)
chr6 (1-262)||(20085882-20086143)
chr6 (1-253)||(20237804-20238056)
chr6 (1-253)||(22131788-22132040)
chr6 (1-253)||(20205211-20205463)
chr6 (1-253)||(22099234-22099486)
chr6 (1-178)||(21971847-21972027)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-258)||(15836-16092)
[»] scaffold0074 (1 HSPs)
scaffold0074 (19-262)||(47864-48107)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-258)||(5391-5630)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 22205020 - 22205277
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||||| |||||||||||||    
T  22205020 ataggtctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttccta 22205119  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||  ||||| |||    
T  22205120 taattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaa 22205219  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcccgttc 258  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22205220 gtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttc 22205277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 24385237 - 24385490
Alignment:
Q  6 tctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttcctataatt 105  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||    
T  24385237 tctattattgctccttcatcaaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcacaagatccaatttatctttcctataatt 24385336  T
Q  106 gttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaa 205  Q
    | ||||||||||||| || |||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||  |||||    
T  24385337 gctcaagaaaccacaatataatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcaaaaaattctatactgtaaa 24385436  T
Q  206 tgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcccgttcg 259  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24385437 agtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcg 24385490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 20086143 - 20085882
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||    
T  20086143 ataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttccta 20086044  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    |||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||| |||  |||      
T  20086043 taattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaaaaattttatact 20085944  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcccgttcgcct 262  Q
    || || ||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  20085943 gttaaagtggatgaaatggtgtacggcctcttcttgtgtcgaggtgaccttcctgttcgcct 20085882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 20238056 - 20237804
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    |||| |||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |  | | ||||||||||||||||||||||| |    
T  20238056 atagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccga 20237957  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||      
T  20237956 taattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatatt 20237857  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcc 253  Q
    |  || |||||||||| | |||||||||||||| |||||||||||||||||||    
T  20237856 gctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcc 20237804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 22132040 - 22131788
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    |||| |||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |  | | ||||||||||||||||||||||| |    
T  22132040 atagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccga 22131941  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||      
T  22131940 taattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatatt 22131841  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcc 253  Q
    |  || |||||||||| | |||||||||||||| |||||||||||||||||||    
T  22131840 gctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcc 22131788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 20205463 - 20205211
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    |||||||||||| || || ||||||||||||||  | ||||| ||||||| |||| ||||||||||| | |  |||| ||||  || |||||||||||||    
T  20205463 ataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttccta 20205364  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    |||||| |||||||||||||  ||||||||| |||||||| ||||||||||||| ||||||||||  || |||||||| |  || |||| ||| ||||      
T  20205363 taattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagc 20205264  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcc 253  Q
     | || |||||||||||  |||| || |||||||||||||||||||| |||||    
T  20205263 cttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc 20205211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 22099486 - 22099234
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    |||||||||||| || || ||||||||||||||  | ||||| ||||||| |||| ||||||||||| | |  |||| ||||  || |||||||||||||    
T  22099486 ataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttccta 22099387  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    |||||| |||||||||||||  ||||||||| |||||||| ||||||||||||| ||||||||||  || |||||||| |  || |||| ||| ||||      
T  22099386 taattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagc 22099287  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcc 253  Q
     | || |||||||||||  |||| || |||||||||||||||||||| |||||    
T  22099286 cttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc 22099234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 21972027 - 21971847
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattc-aagata--ttcacaagatccagtttatctttc 97  Q
    ||||||||| | ||| || ||| |||||||||| || ||||||||||||| |||| | ||||||||| || |||  |||| |||||||| ||||||||||    
T  21972027 ataggtctacttatgttctttccccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatccattttatctttc 21971928  T
Q  98 ctataattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac 178  Q
    ||||||||| ||||||||  ||| |||||||||| |||||||| ||||| ||||||| ||||||||||  || ||||||||    
T  21971927 ctataattgctcaagaaattacaatacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccac 21971847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 16092 - 15836
Alignment:
Q  1 ataggtctattaatgctccttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttccta 100  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||    
T  16092 ataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttccta 15993  T
Q  101 taattgttcaagaaaccacattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaa 200  Q
    |||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| | ||  ||||| |||    
T  15992 taattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac-aatggcagaaatttccaaaaa 15894  T
Q  201 gtaaatgtggaagaaatgttgtacggcctcttcatgtgtcgaggtgaccttcccgttc 258  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15893 gtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttc 15836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 47864 - 48107
Alignment:
Q  19 cttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttcctataattgttcaagaaacca 118  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||  ||||||||||    
T  47864 cttcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgcccaagaaacca 47963  T
Q  119 cattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatg 218  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||  || || ||||||||||||    
T  47964 cagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatg 48063  T
Q  219 ttgtacggcctcttcatgtgtcgaggtgaccttcccgttcgcct 262  Q
     |||| ||||||||||||||||||||||||||||||||||||||    
T  48064 ctgtatggcctcttcatgtgtcgaggtgaccttcccgttcgcct 48107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 5391 - 5630
Alignment:
Q  19 cttcaccaaatgagcatgttcctcaaacaaatcattcaaaacaagattcaagatattcacaagatccagtttatctttcctataattgttcaagaaacca 118  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||| | |||| |||| |||||||  ||||||||||||||||||| |||||||||||    
T  5391 cttcaccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaaagatcccttttatctttcctataattgctcaagaaacca 5490  T
Q  119 cattacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatg 218  Q
     | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||  || || |||||||||| |    
T  5491 aagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaacg 5590  T
Q  219 ttgtacggcctcttcatgtgtcgaggtgaccttcccgttc 258  Q
     |||| ||||||||||||||||||||||||||||||||||    
T  5591 ctgtatggcctcttcatgtgtcgaggtgaccttcccgttc 5630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University