View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_15 (Length: 586)
Name: NF1271_low_15
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 26969435 - 26970014
Alignment:
| Q |
1 |
tgtactccccagctttgtccttggcttcccttgctttctctccggcataacctgcatactcattagttttctgcatcgttgcatcttttgtttccttcgc |
100 |
Q |
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| T |
26969435 |
tgtactccccagctttgtccttggcttcccttgctttctctccggcataacctgcatactcattagttttctgcatcgttgcatcttttgtttccttcgc |
26969534 |
T |
|
| Q |
101 |
cttctgagctgttgcgtctttcgtttccttcgccttctgagctgcagaatcgtagacaccacgtgattggttggctgatatatctctaacttcaccacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
26969535 |
cttctgagctgttgcgtctttcgtttccttcgccttctgagctgcagaatcgtacacaccacgtgattggttggctgatatgtctctaacttcaccacgt |
26969634 |
T |
|
| Q |
201 |
gcaagtcgatcgtcgttgtcgaaaacatggacttctgttgttgggtctcttttgccaactacggcttctcttgcattctcgtaggtgtcctgaacagcct |
300 |
Q |
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| T |
26969635 |
gtaagtcgatcgtcattgtcgaaaacatggacttctgttgttgggtcccttttgccaactacagcttctcttgcattctcgtaggtgtcatgaacagcct |
26969734 |
T |
|
| Q |
301 |
tcatcactgatccaattacaccgggcttctcttgatcatgttgttcttttgttacactga-tttcttcaacgtgtcttggttgttttgatgccatttgaa |
399 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
26969735 |
tcatcactgaaccaattacaccgggcttctcttgatcatgttgttcttttgtta-actgattttcttcaacgtgtcttggttgttttgatcccatttgaa |
26969833 |
T |
|
| Q |
400 |
gaagaagaattaatgtagctttagtttttgttgtgtttttcttttctagtaagataagattgaaatgaaatgagcttgtttactaagttttgttgtagag |
499 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969834 |
gaagaagaattaatgtagctttagtttttgttgtgtgtttcttttctagtaagataagattgaaatgaaatgagcttgtttactaagttttgttgtagag |
26969933 |
T |
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| Q |
500 |
tatagaacctatatataagtgacaacttcccatatataaatatacgaattgtgctagtgctcaaggttatatattattcga |
580 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969934 |
tatagaacctatatataagtgacaacttcccatatataaatatacgaattgtgctagtgctcaaggttatatattattcga |
26970014 |
T |
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