View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_150 (Length: 271)
Name: NF1271_low_150
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_150 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 3576855 - 3576621
Alignment:
| Q |
29 |
aggcaccaccaaccttacttaaattatgtaaatctatcatttaagattcaaagtgaccaatgcattatgcagtgtttattggaaggccctaaaagaaatc |
128 |
Q |
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| T |
3576855 |
aggcaccaccaaccttacttaaattatgtaaatctatcatttaagattcaaagtgaccaatgcattatgctgtgtttattggaaggccctaaaagaaacc |
3576756 |
T |
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| Q |
129 |
cttaattaagacattttcttatagtcttaatttcctgcagaggacaacagtaaatnnnnnnnntatatagaaaaagtgattaagaaagatatttattact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||||||| |
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| T |
3576755 |
cttaattaagacattttcttatagtcttaatttcctgcagaggacaacagtaaa--aaaaaaatatatagaaaaagtgattgagaaagcgatgtattact |
3576658 |
T |
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| Q |
229 |
ggtgatatgatagtaaag---attttggaagaataat |
262 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
3576657 |
ggtgatatgatagtaaagaatattttggaagaataat |
3576621 |
T |
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