View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_153 (Length: 268)
Name: NF1271_low_153
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_153 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 4078577 - 4078377
Alignment:
| Q |
39 |
tgaaaattgatattaataggataactataaaggggggagatgacttacatgattgggggattagaggaaggtggataacctaacnnnnnnnnnnnnnnnn |
138 |
Q |
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| T |
4078577 |
tgaaaattgaaattaataggataactataaaggggggagatgactttcatgattgggggattagaggaaggtggataacctaacaaaaacaaaaagaaga |
4078478 |
T |
|
| Q |
139 |
nnnnnnnnnttagtttaagattaaataagaatgataaattgaaacttggagaatgaattaatcaaatgggtacacaacttttaaattgcgagaccgtcca |
238 |
Q |
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| T |
4078477 |
aagaaaaaattagtttaagattaaataagaatgataaattgaaacttggagaatgaattaatcaaatgggtacacaacttttaaattgcgagaccgtcca |
4078378 |
T |
|
| Q |
239 |
t |
239 |
Q |
| |
|
| |
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|
| T |
4078377 |
t |
4078377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 16351452 - 16351652
Alignment:
| Q |
39 |
tgaaaattgatattaataggataactataaaggggggagatgacttacatgattgggggattagaggaaggtggataacctaacnnnnnnnnnnnnnnnn |
138 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16351452 |
tgaaaattgaaattaataggataactataaaggggggagatgacttacatgattgggggattagaggaaggtggataacctaacaaaaacaaaaagaaga |
16351551 |
T |
|
| Q |
139 |
nnnnnnnnnttagtttaagattaaataagaatgataaattgaaacttggagaatgaattaatcaaatgggtacacaacttttaaattgcgagaccgtcca |
238 |
Q |
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| T |
16351552 |
aagaaaaaattagtttaagattaaataagaatgataaattgaagcttggagaatgaattaatcaaatgggtacacaacttttaaattgcgagaccgtcca |
16351651 |
T |
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| Q |
239 |
t |
239 |
Q |
| |
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| |
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|
| T |
16351652 |
t |
16351652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 26449723 - 26449636
Alignment:
| Q |
148 |
ttagtttaagattaaataagaatgataaattgaaacttggagaatgaattaatcaaatgggtacacaacttttaaattgcgagaccgt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449723 |
ttagtttaagattaaataagaatgataaattgaaacttggagaatgaattaatcaaatgggtacacaacttttaaattgcgagaccgt |
26449636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 26449793 - 26449750
Alignment:
| Q |
78 |
atgacttacatgattgggggattagaggaaggtggataacctaa |
121 |
Q |
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| T |
26449793 |
atgacttacatgattgggggattagaggaaggtggataacctaa |
26449750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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