View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_159 (Length: 264)
Name: NF1271_low_159
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_159 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 66 - 264
Target Start/End: Complemental strand, 41222445 - 41222247
Alignment:
| Q |
66 |
cttcatttttccaaagttgattttattgaagtttgtttagtctttgaaacagaacatgaaagaaaataatatgtctccaacagaggggaatttgcaagag |
165 |
Q |
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| T |
41222445 |
cttcatttttccaaagttgattttattgaagtttgtttagtctttgaaacagaacatgaaagaaaataatatgtctccaacagaggggaatttgcaagag |
41222346 |
T |
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| Q |
166 |
gaacaaaatttcaaagtaggtcgttatagtgcgnnnnnnnnnnnnnnnnnnntttccaagtacagagctaagagaacacagaggaactttaacaagacc |
264 |
Q |
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| T |
41222345 |
gaacaaaatttcaaagtaggtcgttatagtgcggaagaaagaaaagaaaaaatttccaagtacagagctaagagaacacagaggaacttcaacaagacc |
41222247 |
T |
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