View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_16 (Length: 584)
Name: NF1271_low_16
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 284 - 574
Target Start/End: Complemental strand, 35915224 - 35914939
Alignment:
| Q |
284 |
tctattacatcacaggtctcaagtgcttccttattacctgaattacttagatgattatatctagccccttgatcaccaccaatgttctgacccctcactt |
383 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35915224 |
tctattatatcacaggtctcaagtgcttccttattacctgaattacttagatgattataactagccccttgatcaccaccaatgttctgacccctcactt |
35915125 |
T |
|
| Q |
384 |
ctaagggtttctcctttaactcctcattcaatacaagatcattgcagttctcttctgaattccggtcttgaagcatacactaaccttataacccagccca |
483 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35915124 |
ctaagtgtttctcctttaactcctcattcaatacaagatcattgcagttctcttctgaattccggtcttgaagcatacactaaccttataacc-----ca |
35915030 |
T |
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| Q |
484 |
gctatatccagctcctgcatcagttgcaactccttcaaccaaatgactcaaatcatcatgaacccgatccaacatctcaccactacctttg |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915029 |
gctatatccagctcctgcatcagttgcaactccttcaaccaaatgactcaaatcatcatgaacccgatccaacatctcaccactacctttg |
35914939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 290
Target Start/End: Complemental strand, 35915523 - 35915263
Alignment:
| Q |
30 |
atctttacatgcacaaccaccaagcataatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgacttgcttctaacggttgc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915523 |
atctttacatgcacaaccaccaagcataatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgacttgcttctaacggttgc |
35915424 |
T |
|
| Q |
130 |
ccagagtccagatgagaaatctctacaaatcatttcatcatccaaattttcacaattcaaatcaatcacgcatgagtttgtatttagacaccccttttgg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915423 |
tcagagtccagatgagaaatctctacaaatcatttcatcatccaaattttcacaattcaaatcaatcacgcatgagtttgtatttagacaccccttttgg |
35915324 |
T |
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| Q |
230 |
ttctttaatcaataacttgtgcagtcctggttcattagttttagcttccaattttctatta |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915323 |
ttctttaatcaataacttgtgcagtcctggttcattagttttagcttccaattttctatta |
35915263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 354 - 536
Target Start/End: Complemental strand, 35907518 - 35907339
Alignment:
| Q |
354 |
gatcaccaccaatgttctgacccctcacttctaagggtttctcctttaactcctcattcaatacaagatcattgcagttctcttctgaattccggtcttg |
453 |
Q |
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||||||||||||||||||||| ||| |||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
35907518 |
gatcaccaccaatgttctgactcctaacttctaaagctttctcctctaactcctcattcaatacaagatcattgcacgtctcttctgaattccgatcttc |
35907419 |
T |
|
| Q |
454 |
a-agcatacactaaccttataacccagcccagctatatccagctcctgcatcagttgcaactccttcaaccaaatgactcaaat |
536 |
Q |
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| ||||||||||||| | ||||| | |||| |||||||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
35907418 |
accgcatacactaaccctgacaccca----aactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaat |
35907339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 35907925 - 35907786
Alignment:
| Q |
30 |
atctttacatgcacaaccaccaagcataatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgacttgcttctaacggttgc |
129 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||| |||||| |||| | | ||||||||||||||||||||||| ||||||||||| |
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| T |
35907925 |
atctttacatgcacaacca---agcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgctt---------ctaacggttgc |
35907838 |
T |
|
| Q |
130 |
ccagagtccagatgagaaatctctacaaatcatttcatcatccaaattttcac |
182 |
Q |
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|||||| ||||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
35907837 |
ccagaggccagatggcaaatc-ctacaaatcatttcgtcatccaaattttcac |
35907786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 35907727 - 35907652
Alignment:
| Q |
215 |
agacaccccttttggttctttaatcaataacttgtgcagtcctggttcattagttttagcttccaattttctatta |
290 |
Q |
| |
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|||||||||||||||| |||| ||| |||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
35907727 |
agacaccccttttggtgcttttatcgataacttgcgcagccctgattcattagttttagcttccaattttctatta |
35907652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 354 - 536
Target Start/End: Complemental strand, 33910911 - 33910732
Alignment:
| Q |
354 |
gatcaccaccaatgttctgacccctcacttctaagggtttctcctttaactcctcattcaatacaagatcattgcagttctcttctgaattccggtcttg |
453 |
Q |
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||||||||||||||||||||| ||| |||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
33910911 |
gatcaccaccaatgttctgactcctaacttctaaagctttctcctctaactcctcattcaatacaagatcattgcacgtctcttctgaattccgatcttc |
33910812 |
T |
|
| Q |
454 |
a-agcatacactaaccttataacccagcccagctatatccagctcctgcatcagttgcaactccttcaaccaaatgactcaaat |
536 |
Q |
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| ||||| ||||||| | ||||| | |||| |||||||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
33910811 |
actgcatatactaaccctgacaccca----aactatgtccagctcctgcatcagttgcaacgccttcaaccaaattaatcaaat |
33910732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 33911318 - 33911179
Alignment:
| Q |
30 |
atctttacatgcacaaccaccaagcataatcaaatctgtatttttattagcactgtgtggagtgccaacagcagttgcttgacttgcttctaacggttgc |
129 |
Q |
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||||||||||||||||||| |||||||||||| ||||| |||||| |||| | | ||||||||||||||||||||||| ||||||||||| |
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| T |
33911318 |
atctttacatgcacaacca---agcataatcaaacctgtacttttatcagcaatatttggagtgccaacagcagttgctt---------ctaacggttgc |
33911231 |
T |
|
| Q |
130 |
ccagagtccagatgagaaatctctacaaatcatttcatcatccaaattttcac |
182 |
Q |
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|||||| ||||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
33911230 |
ccagaggccagatggcaaatc-ctacaaatcatttcgtcatccaaattttcac |
33911179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 33911120 - 33911045
Alignment:
| Q |
215 |
agacaccccttttggttctttaatcaataacttgtgcagtcctggttcattagttttagcttccaattttctatta |
290 |
Q |
| |
|
|||||||||||||||| |||| || |||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
33911120 |
agacaccccttttggtgcttttattgataacttgcgcagccctgattcattagttttagcttccaattttctatta |
33911045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 521
Target Start/End: Complemental strand, 41140615 - 41140577
Alignment:
| Q |
483 |
agctatatccagctcctgcatcagttgcaactccttcaa |
521 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||| |
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| T |
41140615 |
agctatgtccatctcctgcatcagttgcaactccttcaa |
41140577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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