View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_161 (Length: 262)
Name: NF1271_low_161
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_161 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 246
Target Start/End: Original strand, 33526065 - 33526279
Alignment:
| Q |
30 |
acattaatcccaacttaatccttgaattccaactatatgttttatatatgtggttctaaatttttattgtatgtaaaataccgctcattggttggacaag |
129 |
Q |
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| T |
33526065 |
acattaatcccaacttaatccttgaattccaactat--gttttatatatgtggttctaaatttttattgtatgtaaaataccgctcattggttggacaag |
33526162 |
T |
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| Q |
130 |
tttatgattatgctcaagaagaaaacgtgaaattattgttccatctaaacaaatacacacacattcaatctagtcttatcttgagtttttgtgataggat |
229 |
Q |
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| T |
33526163 |
tttatgattatgctcaagaagaaaacgtgaaattattgttccatctaaacaaatacacacacattcaatctagtcttatcttgagtttttgtgataggat |
33526262 |
T |
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| Q |
230 |
ttacttcgaaatatttt |
246 |
Q |
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| T |
33526263 |
ttacttcgaaatatttt |
33526279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 33524565 - 33524754
Alignment:
| Q |
30 |
acattaatcccaacttaatccttgaattccaactatatgttttatatatgtggttctaaatttttattgtatgtaaaataccgctcattggttggacaag |
129 |
Q |
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| T |
33524565 |
acattaattccaacttaataattgagttc-aac-atatgttttatatacacggttctaaatttttattgtatctaaaataccgcaccttggttggacaac |
33524662 |
T |
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| Q |
130 |
tttatgattatgctcaagaagaaaacgtgaaatt---attgttccatc-taaacaaatacacacacattcaatctagtcttatcttgagttttt |
219 |
Q |
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| T |
33524663 |
tttataattatgctcaagaataaatcttgaaattgtaatggttccatcttaaacaaat--tcacacattcaatctagtcttatattgatttttt |
33524754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 33521710 - 33521636
Alignment:
| Q |
76 |
tatgtggttctaaatttttattgtatgtaaaataccgctcattggttggac-aagtttatgattatgctcaagaa |
149 |
Q |
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| T |
33521710 |
tatgtggttccaaatttttattggatctaaaatattgcaccttggttggactaagttcatgattatgttcaagaa |
33521636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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