View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_164 (Length: 261)
Name: NF1271_low_164
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_164 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 14771472 - 14771218
Alignment:
| Q |
1 |
tataatcataaacggtcttgctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattcttc |
100 |
Q |
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| T |
14771472 |
tataatcataaactgtcttgctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattcttc |
14771373 |
T |
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| Q |
101 |
tttgtagcttttctttgatcctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtctatt |
195 |
Q |
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| T |
14771372 |
tttgtagcttttctttgaacctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctttt |
14771273 |
T |
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| Q |
196 |
tctctccaattaatgaatgaaacagcaacnnnnnnncaagtatcatctagcctatg |
251 |
Q |
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| T |
14771272 |
tctctacaattaatgaatgaaacagcaac-aaaaaacaagtatcatctagcctatg |
14771218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 47648566 - 47648614
Alignment:
| Q |
94 |
attcttctttgtagcttttctttgatcctttctttgtgaagtagttgaa |
142 |
Q |
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| T |
47648566 |
attcttttttgtagcttttgtttgaatctttctttgtgaagcagttgaa |
47648614 |
T |
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