View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_170 (Length: 256)
Name: NF1271_low_170
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_170 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 9848205 - 9848368
Alignment:
| Q |
92 |
cagttgtaactgacaattagttgtgaattggatcataagctcannnnnnnaggcattttaggccatgttggaactgatcaaaccttgtgcttcatggatt |
191 |
Q |
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| T |
9848205 |
cagttgtaactgagaattagttgtgaattggattataagctcatttttt-aggcattttaggccatgttggaactgatcaaaccttgtgcttcatggatt |
9848303 |
T |
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| Q |
192 |
cactgataggaagnnnnnnnccttcccttaatcgaagttatgcttgaaaaccattttgaagagtt |
256 |
Q |
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| T |
9848304 |
cactgataggaagtttttttccttcccttaatcgaagttatgcttgaaaaccattttaaagagtt |
9848368 |
T |
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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 9848086 - 9848176
Alignment:
| Q |
6 |
ctccaacaatattactgggtagacatgttttttctcctccatatcttcatacagattgatattcttcatttttgttgccataaatacagtt |
96 |
Q |
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| T |
9848086 |
ctccaaccatattactgggtagacatgttttttctcctccatatcttcataaagattgatattcttcatttttgttgccataaatacagtt |
9848176 |
T |
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