View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_171 (Length: 255)
Name: NF1271_low_171
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_171 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 1464661 - 1464870
Alignment:
| Q |
18 |
aatgaatggacgtgtttcaggcttatggagcggaatactcttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaata |
117 |
Q |
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| T |
1464661 |
aatgtatggacgtgtttcaggcttatggagcggaatactcttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaata |
1464760 |
T |
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| Q |
118 |
ctaattattcaatttaggcaaagcctgaacaatcttgaagaattagttcaatatttttctcaggaaaaatattaataatgacgaagaaagactcagagac |
217 |
Q |
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| T |
1464761 |
ctaattattcaatttaggcaaaggctgcacaatcttgaagaattggttcaatatttttctcaggaaaaatattaataatgacgaagaaagactcagagac |
1464860 |
T |
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| Q |
218 |
ctaagctatt |
227 |
Q |
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|||||||||| |
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| T |
1464861 |
ctaagctatt |
1464870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 26792313 - 26792455
Alignment:
| Q |
16 |
ttaatgaatggacgtgtttcaggcttatggagcggaatactcttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaa |
115 |
Q |
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|||||||||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||| || |||||||| || || |||||||| ||| |||| |
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| T |
26792313 |
ttaatgaatggatgtgttacaggcttatggagaagaatactctaaagggccgtgttgagtcagtggtgaagct---cggacttgacattgagacaattaa |
26792409 |
T |
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| Q |
116 |
tactaattattcaatttaggcaaagcctgaacaatcttgaagaatt |
161 |
Q |
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| T |
26792410 |
gcagaattatacaatataggaaaagcttgaacaatcttcaagaatt |
26792455 |
T |
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