View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_175 (Length: 252)
Name: NF1271_low_175
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_175 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 29582894 - 29583141
Alignment:
| Q |
3 |
catctccaacaatatgtttggcacaagcaataactttgttcctgaagtactaaatagttgtggttaaatcactttgataaagatgtatgtatggatacta |
102 |
Q |
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| T |
29582894 |
catctccaacaaaatgtttggcacaagcaataactttgttcctgaagtactaaatagttgcagttaaatcactttgataaagatgtatgtatggatacta |
29582993 |
T |
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| Q |
103 |
actaagtattgatttttgaaaaaagcagttactagttaggaatccctatgggaacaatgtgtaccaatatttgttttggattatcaatatgtaactaatt |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29582994 |
actaagtattgatttttgaaaaaagcggttactagttaggaatccctatgggaacaatgtgtaccaatatttgttttggattatcaatatgtaactaatt |
29583093 |
T |
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| Q |
203 |
taatagtttgaaggtttgaaaccatcagtttatcacatttataaaacag |
251 |
Q |
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| T |
29583094 |
taatagtttgaaggtttgaaaccatcagtttatcaca-ttataaaacag |
29583141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29611136 - 29611084
Alignment:
| Q |
3 |
catctccaacaatatgtttggcacaagcaataactttgttcctgaagtactaa |
55 |
Q |
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|||||||||||| |||| | || ||||||||| |||||||||||||||||||| |
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| T |
29611136 |
catctccaacaaaatgtctcgcgcaagcaatagctttgttcctgaagtactaa |
29611084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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