View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_177 (Length: 252)
Name: NF1271_low_177
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_177 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 1464025 - 1464263
Alignment:
| Q |
13 |
aatatcttggaaaacaaggtaggttattttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgac |
112 |
Q |
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| T |
1464025 |
aatatcttggaaaacaaggtaggttattttctttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgac |
1464124 |
T |
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| Q |
113 |
ttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcactt |
212 |
Q |
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| T |
1464125 |
ttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgctgatagcctcgtgcactt |
1464224 |
T |
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| Q |
213 |
gcannnnnnnnnccttttatctaattgtttcatattttct |
252 |
Q |
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| T |
1464225 |
gca-ttttttttccttttatctaattgtttcatattttct |
1464263 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 26791741 - 26791937
Alignment:
| Q |
13 |
aatatcttggaaaacaaggtaggttattt--tccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcg |
110 |
Q |
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| T |
26791741 |
aatattttggaaaacaaggtagattttttatttattttcgctttatcatttggtcac---gttgataaggacgagccttggcgcaactctaaggttgttc |
26791837 |
T |
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| Q |
111 |
acttatgttcaaatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcac |
210 |
Q |
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| T |
26791838 |
ac--atgttcaaatattggaaatagtatatctgcttgtagggataaggctgcg---acatctaccttctccgaactcctcttgacgggagcctcgtgcac |
26791932 |
T |
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