View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_18 (Length: 579)
Name: NF1271_low_18
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_18 |
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| [»] scaffold0037 (7 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 5e-42; HSPs: 7)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 374 - 485
Target Start/End: Original strand, 104676 - 104787
Alignment:
| Q |
374 |
aaattaagaaactggtaaatttatgttccaacatcttgcgtgacattgacaactgttgcattttttcttttgttaaaacatctcttctttgtgttgcttt |
473 |
Q |
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| T |
104676 |
aaattaggaaactggtaaatttatgtcccaacatcttgcgtgtcattgacaactgttgcatttttgcttttgttaaaacatcttgtctttgtgttgcttt |
104775 |
T |
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| Q |
474 |
gctgcttttgta |
485 |
Q |
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| T |
104776 |
gctgcttttgta |
104787 |
T |
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Target: scaffold0037; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 104162 - 104220
Alignment:
| Q |
168 |
aagggataatgtatttggattttagcagtgaatatgttaggattttagcagactcttga |
226 |
Q |
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| T |
104162 |
aagggataatgtataaggattttagcagtaaatatgttaggattttagcagactcttga |
104220 |
T |
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Target: scaffold0037; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 30323 - 30236
Alignment:
| Q |
374 |
aaattaagaaactggtaaatttatgttccaacatcttgcgtgacattgacaactgttgcattttttcttttgttaaaacatctcttct |
461 |
Q |
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| T |
30323 |
aaattaagaaacttgcaaatttatgtccgaacatattgcgtgtcattgataagtgttgcatttttgctttggttaaaacatcttttct |
30236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 31007 - 30964
Alignment:
| Q |
335 |
tcacttttattacaacaatcatacaggagtatatcatagaaatt |
378 |
Q |
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| T |
31007 |
tcacttttattacaagaatcatacacgagtatatcatagaaatt |
30964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 31291 - 31254
Alignment:
| Q |
194 |
agtgaatatgttaggattttagcagactcttgaattgt |
231 |
Q |
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| T |
31291 |
agtgaatatgttaggattttagcagactcttgatttgt |
31254 |
T |
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Target: scaffold0037; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 574
Target Start/End: Original strand, 104939 - 105004
Alignment:
| Q |
509 |
aaaaggtcgggaagtttgcaacacctttcttctgaatacttaacttagacttggacctatgctact |
574 |
Q |
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| T |
104939 |
aaaaggtcaagaagtttgcaacgcttttctcgtgaatacttaactgagacttggacctatgttact |
105004 |
T |
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Target: scaffold0037; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 31098 - 31029
Alignment:
| Q |
237 |
taatttagaaactct----gtcaatatctaacaatattagtgtctgctgcatataatgtaatgcagacaa |
302 |
Q |
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| T |
31098 |
taatttagaaactctcggtgtcaatatctaacattattggtgtctgctgaacatagtgtaatgcaaacaa |
31029 |
T |
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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 574
Target Start/End: Original strand, 14200380 - 14200455
Alignment:
| Q |
500 |
tcttcaagt-aaaaggtcgggaagtttgcaacacctttcttctgaatacttaacttagacttggacctatgctact |
574 |
Q |
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| T |
14200380 |
tcttcaagtgaaaaggtcgggaagtttgcaacacctttctcgtgaatacttaactgagacttggacctatgttact |
14200455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 14199837 - 14199895
Alignment:
| Q |
168 |
aagggataatgtatttggattttagcagtgaatatgttaggattttagcagactcttga |
226 |
Q |
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| T |
14199837 |
aagggataatgtattaggattttagccgtgaatatgttagaattttagtagactcttga |
14199895 |
T |
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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 419 - 485
Target Start/End: Original strand, 14200172 - 14200238
Alignment:
| Q |
419 |
ttgacaactgttgcattttttcttttgttaaaacatctcttctttgtgttgctttgctgcttttgta |
485 |
Q |
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| T |
14200172 |
ttgacaacggtttcatttttgcttttgttaaaacatattttctttgtgtggctttgctgcttttgta |
14200238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 14200127 - 14200170
Alignment:
| Q |
233 |
agattaatttagaaactctgtcaatatctaacaatattagtgtc |
276 |
Q |
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| T |
14200127 |
agattaatttagaaactctgtaaatatctaacaatatgagtgtc |
14200170 |
T |
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