View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_182 (Length: 252)
Name: NF1271_low_182
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_182 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 23433463 - 23433253
Alignment:
| Q |
12 |
ataattctgcggtcacacccgtcacaaaatgtaagagggtggctgatctgataagtaactctccacaggaagctccatccaataattccccggccacacc |
111 |
Q |
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| T |
23433463 |
ataattccgcagtcacacccctcataaaatgtaagagggtggcggatctgataagtaactctccacaggaagctccatccaataattccccggccacacc |
23433364 |
T |
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| Q |
112 |
cctcataaatgctgaagtaaaacggactcgactggagattaccaattcacctcctgtgctaatttctagaagcagcccgcctaattcttccgaaggggtg |
211 |
Q |
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| T |
23433363 |
cctcataaatgctgaagtaaaacggactcgactggagatttccaattcacctcctgtgctaatttctagaagcagcccgcctaattcttccgaaggggtg |
23433264 |
T |
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| Q |
212 |
gatgaaatgtg |
222 |
Q |
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||||||||||| |
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| T |
23433263 |
gatgaaatgtg |
23433253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 23438074 - 23437913
Alignment:
| Q |
47 |
agggtggctgatctgataagtaactctccacaggaagctccatccaataattccccggccacacccctcataaatgctgaagtaaaacggactcgactgg |
146 |
Q |
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| T |
23438074 |
agggtggctgatcggataaggaactctccacaggaagctccgtccaataattcccctgccacacccgtcataaatatt---gtaaaacggcctcgactag |
23437978 |
T |
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| Q |
147 |
agattaccaattcacctcctgtgctaatttctagaagcagcccgcctaattcttccgaaggggtg |
211 |
Q |
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| T |
23437977 |
aggtttccagttcacctcctgtgcaaattcctagaagcagccagcccagttcatctgaaggggtg |
23437913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 23446745 - 23446829
Alignment:
| Q |
62 |
ataagtaactctccacaggaagctccatccaataattccccggccacacccctcataaatgctgaagtaaaacggactcgactgg |
146 |
Q |
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| T |
23446745 |
ataagtaactctccaaaggaagatccaaccaataattccccggacacacccctcatcaatgttgaagtaaaaaagcctcgactgg |
23446829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 23433482 - 23433436
Alignment:
| Q |
74 |
ccacaggaagctccatccaataattccccggccacacccctcataaa |
120 |
Q |
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| T |
23433482 |
ccacaggaagctctatccaataattccgcagtcacacccctcataaa |
23433436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 21138000 - 21138159
Alignment:
| Q |
63 |
taagtaactctccacaggaagctccatccaataattccccggccacacccctcataaatgctgaagtaaaacggactcgactggagattaccaattcacc |
162 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| || | ||||||||||||| ||||||||||| || | | |||| | |
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| T |
21138000 |
taaggaactctccacaggaagctccaaccaataatttcccggacacgcccctcaaaaccgttgaagtaaaacggcctcgactggaggtttcaagttcagc |
21138099 |
T |
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| Q |
163 |
tcctgtgctaatttctagaagcagcccgcctaattcttccgaaggggtggatgaaatgtg |
222 |
Q |
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|||||| | |||| || ||| || || || |||||| ||| |||||||||||||||| |
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| T |
21138100 |
tcctgtacaaattcctggaaacaaccagcaaggttcttcggaatgggtggatgaaatgtg |
21138159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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