View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_184 (Length: 251)
Name: NF1271_low_184
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_184 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30959109 - 30959348
Alignment:
| Q |
1 |
cccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaa |
100 |
Q |
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| T |
30959109 |
cccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctcttacacgaaaagaggcagcatttgctctcgaa |
30959208 |
T |
|
| Q |
101 |
gcattcatgaaaatcccttctcagtataagtataaggccgcagtagcgcttggtctactagggtaagattatgattcattaccttcagtgttattctcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30959209 |
gcattcatgaaaatcccttctcagtataagtataaggccgcagcagcgcttggtctactagggtaagattatgattcattaccttcagtgttattctcta |
30959308 |
T |
|
| Q |
201 |
ttatttttcatattgaatnnnnnnngagtctcaagttcat |
240 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
30959309 |
ttatttttcatattgaataaaaaaagagtctcaagttcat |
30959348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 11688939 - 11688829
Alignment:
| Q |
20 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
119 |
Q |
| |
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||||||||||||||||||||| |||| || |||||||| || | ||| |||||||||||| ||||||||||| || | |||||| ||| |||| |||| |
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| T |
11688939 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
11688840 |
T |
|
| Q |
120 |
ctcagtataag |
130 |
Q |
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| T |
11688839 |
ctcagtataag |
11688829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 7474336 - 7474443
Alignment:
| Q |
23 |
ctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctc |
122 |
Q |
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|||||||||||||||||| ||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |
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| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
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| Q |
123 |
agtataag |
130 |
Q |
| |
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|||||||| |
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| T |
7474436 |
agtataag |
7474443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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