View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_187 (Length: 251)

Name: NF1271_low_187
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_187
NF1271_low_187
[»] chr7 (2 HSPs)
chr7 (30-251)||(3621311-3621532)
chr7 (30-251)||(3631708-3631929)
[»] scaffold0287 (1 HSPs)
scaffold0287 (30-251)||(14156-14377)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 3621532 - 3621311
Alignment:
Q  30 aacttgacacttcaaatctccatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagcaattgttgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3621532 aacttgacacttcaaatctccatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagcaattgttgt 3621433  T
Q  130 ttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcacatggtccaaaaacattgtcatacaatggt 229  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3621432 ttgctcatctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcacatggtccaaaaacattgtcatataatggt 3621333  T
Q  230 atagatatgatattttcaccat 251  Q
    ||||||||||||||||||||||    
T  3621332 atagatatgatattttcaccat 3621311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 3631929 - 3631708
Alignment:
Q  30 aacttgacacttcaaatctccatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagcaattgttgt 129  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3631929 aacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagccattgttgt 3631830  T
Q  130 ttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcacatggtccaaaaacattgtcatacaatggt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||     
T  3631829 ttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtcatacaatggc 3631730  T
Q  230 atagatatgatattttcaccat 251  Q
    || |||||||||||||||||||    
T  3631729 atggatatgatattttcaccat 3631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 14156 - 14377
Alignment:
Q  30 aacttgacacttcaaatctccatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagcaattgttgt 129  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14156 aacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagccattgttgt 14255  T
Q  130 ttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcacatggtccaaaaacattgtcatacaatggt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||     
T  14256 ttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtcatacaatggc 14355  T
Q  230 atagatatgatattttcaccat 251  Q
    || |||||||||||||||||||    
T  14356 atggatatgatattttcaccat 14377  T

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