View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_188 (Length: 251)
Name: NF1271_low_188
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_188 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 49275591 - 49275815
Alignment:
| Q |
30 |
ggtagtaagttttcgtctctt---ctgttgcttcttgggcagcttgggcaggaccaagctaacatcacccaactctccagatgaagcctccaagttaagc |
126 |
Q |
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| T |
49275591 |
ggtagtaagttttcgtctcttcttctgttgcttcttgggcagcttaggcaggaccaagctaacatcacccaactctccagatgaagcctccaagttaagc |
49275690 |
T |
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| Q |
127 |
catttcaccaaaagcatcgccctttcttctcttgaatctggagctgatgatgtgatgtaacttacagcttcctcaaacacccttctggcatgctcaatgc |
226 |
Q |
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| T |
49275691 |
catttcaccaaaagcatcgccctttcttctcttgaatctggagctgatgatgtgatgtaactcacagcttcctcaaacacccttctggcatgctcaatgc |
49275790 |
T |
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| Q |
227 |
attgcttcttttgttctaaacccgc |
251 |
Q |
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| T |
49275791 |
attgcttcttttgttctaaacccgc |
49275815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 49279169 - 49279381
Alignment:
| Q |
39 |
ttttcgtctcttctgttgcttcttgggcagcttgggcaggaccaagctaacatcacccaactctccagatgaagcctccaagttaagccatttcaccaaa |
138 |
Q |
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|||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
49279169 |
ttttagtctcttctgtcgcttcttgggcagcttaggcaggactaagctaacatcacccaactctccagagaaagcctccaagttgagccatttcaccaaa |
49279268 |
T |
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| Q |
139 |
agcatcgccctttcttctcttgaatctggagctgatgatgtgatgtaacttacagcttcctcaaacacccttctggcatgctcaatgcattgcttctttt |
238 |
Q |
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| T |
49279269 |
agcatcgccctttcttctcttgaatctggagctgatgatgtgatgtaactcacagcttcctcaaacacccttctggcatgctcaatgcattgtttctttt |
49279368 |
T |
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| Q |
239 |
gttctaaacccgc |
251 |
Q |
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| T |
49279369 |
gttctaaacccgc |
49279381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 34790612 - 34790461
Alignment:
| Q |
56 |
gcttcttgggcagcttgggcaggaccaagctaacatcacccaactctccagatgaagcctccaagttaagccatttcaccaaaagcatcgccctttcttc |
155 |
Q |
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| T |
34790612 |
gcttcttgggcagcttagactggactaagctgacatcacctagctccccagatgaagcctccaagttgagccatttctccaatagcattgccctttcttc |
34790513 |
T |
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| Q |
156 |
tcttgaatctggagctgatgatgtgatgtaacttacagcttcctcaaacacc |
207 |
Q |
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| T |
34790512 |
ttttaaaattggagctgatgatctgaagtggtttagagcatcctcaaacacc |
34790461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 2288161 - 2288312
Alignment:
| Q |
56 |
gcttcttgggcagcttgggcaggaccaagctaacatcacccaactctccagatgaagcctccaagttaagccatttcaccaaaagcatcgccctttcttc |
155 |
Q |
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|||||||||||||||| | | |||| ||||| |||||||| | ||| |||||||||||||||||||| ||||||||| | || ||||| ||||||||||| |
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| T |
2288161 |
gcttcttgggcagcttagactggactaagctgacatcacctagctccccagatgaagcctccaagttgagccatttctctaatagcattgccctttcttc |
2288260 |
T |
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| Q |
156 |
tcttgaatctggagctgatgatgtgatgtaacttacagcttcctcaaacacc |
207 |
Q |
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| T |
2288261 |
ttttaaatccggagctgatgatctgaagtggtttagagcatcctcaaacacc |
2288312 |
T |
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